hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14121421/chunk_1/iprscan-20080502-14121421.nocrc
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Query sequence: KIAA1837
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00089                                                 153.0      3e-41   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00089    1/4      52   141 ..     1    91 []    24.7    0.013
SM00089    2/4     147   237 ..     1    91 []    42.4  6.2e-08
SM00089    3/4     243   331 ..     1    91 []    42.0  8.1e-08
SM00089    4/4     337   428 ..     1    91 []    44.0    2e-08

Alignments of top-scoring domains:
SM00089: domain 1 of 4, from 52 to 141: score 24.7, E = 0.013
                   *->vadftasptvgvksiAagesVtFtass.StdedGsivsytWdFGDGs
                       a ++++ ++      ++++ t+ + s+Std+d  iv y+W     +
    KIAA1837    52    IAIVSPQFQEIS----LPTTSTVIDGSqSTDDDK-IVQYHWE----E 89   

                   ......atsstg..ptvtHtYtkpGtYtVtLtvtnavGnssssatktvvV
                    +++ + + ++++++   ++ + pG+Yt++Ltv +++G +++s+t++++V
    KIAA1837    90 lkgplrEEKISEdtAILKLSKLVPGNYTFSLTVVDSDG-ATNSTTANLTV 138  

                   vvp<-*
                         
    KIAA1837   139 NKA    141  

SM00089: domain 2 of 4, from 147 to 237: score 42.4, E = 6.2e-08
                   *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGsa
                      va++ ++   ++    ++ s+t+ + +Std+ G i+sy+W++     
    KIAA1837   147    VANAGPNQVITL----PQNSITLFGNQSTDDHG-ITSYEWSLSPS-- 186  

                   tsstgptvtHtYtkp..........GtYtVtLtvtnavGnssssatktvv
                     s g+ v +   ++++ + +  ++G+Yt +Ltvt+ +G + ++a++tv+
    KIAA1837   187 --SKGKVVEMQGVRTptlqlsamqeGDYTYQLTVTDTIG-QQATAQVTVI 233  

                   Vvvp<-*
                   V+++   
    KIAA1837   234 VQPE    237  

SM00089: domain 3 of 4, from 243 to 331: score 42.0, E = 8.1e-08
                   *->vadftasptvgvksiAagesVtFtassStdedGsivsytW..dFGDG
                       ad+ + ++ ++    +  s t+++s  +++d +i+sy+W+++ G +
    KIAA1837   243    QADAGPDKELTL----PVDSTTLDGSK-SSDDQKIISYLWekTQGPD 284  

                   s..atsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp<-
                   + + + +++  +t+t +++GtY +tLtv+++  n+ s  +++v+V+++  
    KIAA1837   285 GvqLENANSSVATVTGLQVGTYVFTLTVKDER-NLQSQSSVNVIVKEE   331  

                   *
                    
    KIAA1837     -   -    

SM00089: domain 4 of 4, from 337 to 428: score 44.0, E = 2e-08
                   *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGs.
                       a +t ++  ++    ++ ++ +++s S+d+ G ivsy+W+   Gs+
    KIAA1837   337    IAKITGNVVITL----PTSTAELDGSKSSDDKG-IVSYLWTRDEGSp 378  

                   ..atsstg....ptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvv
                     +++++ ++++p   ++ + +GtYt++L+vt+a+G +s+++ +tv+V++
    KIAA1837   379 aaGEVLNHsdhhPILFLSNLVEGTYTFHLKVTDAKG-ESDTDRTTVEVKP 427  

                   p<-*
                       
    KIAA1837   428 D    428  

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