# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh26155mrp1.fasta.huge -Q ../query/KIAA1838.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1838, 917 aa vs ./tmplib.25089 library 1986588 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.2075+/-0.0065; mu= 16.4878+/- 0.443 mean_var=156.4785+/-38.037, 0's: 0 Z-trim: 6 B-trim: 129 in 1/39 Lambda= 0.102529 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0183 ( 1111 res) ha02726 (1111) 340 63.2 1.9e-10 KIAA1802 ( 821 res) fj21631 ( 821) 167 37.4 0.0082 >>KIAA0183 ( 1111 res) ha02726 (1111 aa) initn: 644 init1: 231 opt: 340 Z-score: 279.4 bits: 63.2 E(): 1.9e-10 Smith-Waterman score: 731; 24.471% identity (53.647% similar) in 850 aa overlap (16-826:2-809) 10 20 30 40 50 KIAA18 ILSRSSVMGVRGLQGFVGSTCPHICTVVNFKELAEHH-----RSKYPGCTPTIVVDAMCC .. . :: . :....::. :.. : ..::: : KIAA01 DYIEKHCPSAVVPVELQKLARGSLVGGGRQRPPQTPLRLLVDADNC 10 20 30 40 60 70 80 90 100 110 KIAA18 LRYWYTP--ESWICGGQWREYFSALRDFVKTFTAAGIKLIFFFDGMVEQDKRDEWVKRRL :. : .:. :::: .... : ..:. ...:.:. ::.: .:. . :::::. KIAA01 LHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNIELFVFFNGALEKARLHEWVKRQG 50 60 70 80 90 100 120 130 140 150 160 170 KIAA18 KNNREISRIFHYIKSHKEQPGRNMFFIPSGLAVFTRFALKTLGQETLCSLQEADYEVASY .. . ..: ..... : . :. : .: :.:: . .. :... :: .. KIAA01 NERQTAQQIVSHVQNKGTPPPKVWFLPPVCMAHCIRLALIRFHVKVAQSIEDHHQEVIGF 110 120 130 140 150 160 180 190 200 210 220 KIAA18 GLQHNCLGILGEDTDYLIYDTCPYFSISELCL----ESLDTVMLCREKLCESLGLCVADL ... :... :.:: . . ::: : : .:: : . ... ..: : . KIAA01 CRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYLMHEVAKQLDLNPNRF 170 180 190 200 210 220 230 240 250 260 270 280 KIAA18 PLLACLLGNDIIPEGMFESFRYKCLSSYTSVKENFDKKGNIILAVSDHISKVLYLYQGEK :..: :::: :.:. . ::... :. . . ...: : . :.. : . KIAA01 PIFAALLGNHILPDEDLASFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVADYV--R 230 240 250 260 270 280 290 300 310 320 330 340 KIAA18 KLEEILPLGPNKALFYKGMASYLLPGQKSPWFFQKPKGVITLDKQV--ISTSSDAESREE .... : ..:. .. ..: . :: . . . :..: : . KIAA01 NIQDTSDL--------DAIAKDVFQHSQS----RTDDKVIRFKRAIGYYSATSKPMSFHP 290 300 310 320 330 350 360 370 380 390 400 KIAA18 VPMCSDAESRQEVPMCTGPESRREVPVYTDSEPRQEVPMCSDPEPRQEVPTCTGPESRRE . . . .: . :. :: . : .. . . : : ::. : .. KIAA01 PHYLAARPGPFGMPGMVPPH----VPPQMLNIP--QTSLQAKPVAPQ-VPSPGGAPGQGP 340 350 360 370 380 410 420 430 440 450 460 KIAA18 VPMC-SDPEPRQEVPMCTGPEARQEVPMYTD-SEPRQEVPMYTDSEPRQEVPMYTGSEPR :. :.: : . . :. . : :.. . ...:.: : : . : .:: . KIAA01 YPYSLSEPAP---LTLDTSGKNLTEQNSYSNIPHEGKHTPLYERSSPIN--PAQSGSPNH 390 400 410 420 430 440 470 480 490 500 510 520 KIAA18 QEVPMYTGPESRQEVPMYTGPESRQEVLIRTDPESRQEIMCTGHESKQEVPICTDPISKQ . .. : . . : . :. : ..: :..: :: .. KIAA01 VDSAYFPGSSTSSSSDNDEGSGGA------TNHISGNKIGWEKTGSHSEPQARGDPGDQT 450 460 470 480 490 530 540 550 560 570 580 KIAA18 EDSMCTHAEINQKLPVATDFEF-KLEALMC--TNPEIKQEDPTNVGPEVKQQVTMVSDTE . . : ...: . .. .. . : . : .. : :. : . . : KIAA01 KAEGSSTASSGSQLAEGKGSQMGTVQPIPCLLSMPTRNHMDITT--PPLPPVAP-----E 500 510 520 530 540 590 600 610 620 630 640 KIAA18 ILKVARTHHVQAESY-LVYNIMSSGEIECSNTLEDELDQALPSQAFIYRPIRQRVYSLLL .:.::. .: .. : .......:::. . ..::: .. :: :..:::.:: ::..:. KIAA01 VLRVAEHRHKKGLMYPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLF 550 560 570 580 590 600 650 660 670 680 KIAA18 EDCQDVTSTC-LA--------------VKEWFVYPGNPLRHPDLVRPLQMTIPGGTPSLK .. .: :: .::: .: :. . :.::. : . :.:: KIAA01 SLAESRKKTERLAFRKNRLPPEFSPVIIKEWAAYKGKSPQTPELVEALAFR-EWTCPNLK 610 620 630 640 650 660 690 700 710 720 730 740 KIAA18 ILWLNQEPEIQVRRLDTLLACFNLSSSREELQAVESP--FQALCCLLIYLFVQ---VDTL :::.. : . ::. ..:::. :.. :. .. : ...:::.: :. :: . : KIAA01 RLWLGKAVEDKNRRMRAFLACMR-SDTPAMLNPANVPTHLMVLCCVLRYM-VQWPGARIL 670 680 690 700 710 720 750 760 770 780 790 800 KIAA18 CLEDLHAFIAQALCLQGKSTSQLVNLQPDYINPRAVQLGSLLVRGLTTLVLVNSACGFPW ..: ::.:::: . .:: .:. . ..::..::..:.. :. ...:.::: : KIAA01 RRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFMSGVDMALFANDACGQPI 730 740 750 760 770 780 810 820 830 840 850 860 KIAA18 KTSDFMPWNVFDGKLFHQKYLQSEKGYAVEVLLEQNRSRLTKFHNLKAVVCKACMKENRR :: ::::::..: :.. . KIAA01 PWEHCCPWMYFDGKLFQSKLLKASREKTPLIDLCDGQADQAAKVEKMRQSVLEGLSFSRQ 790 800 810 820 830 840 >>KIAA1802 ( 821 res) fj21631 (821 aa) initn: 105 init1: 58 opt: 167 Z-score: 142.4 bits: 37.4 E(): 0.0082 Smith-Waterman score: 188; 26.070% identity (49.805% similar) in 257 aa overlap (245-481:82-325) 220 230 240 250 260 270 KIAA18 REKLCESLGLCVADLPLLACLLGNDIIPEGMFESFRYKCLSSYTSVKENFDKKGNIILAV :. . :. :...: . :: : . KIAA18 EMDAGGLGKMIFYQKSAKLFHCHKCFFTSKMYSNVYYHITSKHASPDKWNDKPKNQLNKE 60 70 80 90 100 110 280 290 300 310 320 KIAA18 SDHISKVLYLYQGEK-KLEEILPLG-PNKALFYKGMASYLLPGQKSPWFF-----QKPKG .: . : : . .: . : . : .. . ..: : : . .: . ::: . KIAA18 TDPV-KSPPLPEHQKIPCNSAEPKSIPALSMETQKLGSVLSPESPKPTPLTPLEPQKPGS 120 130 140 150 160 170 330 340 350 360 370 380 KIAA18 VITLDKQVISTSSDAESREEVPMCSDAESRQEVPMCTGPESRREVPVYTDSEPRQEVPMC :.. . :. : . . : :. : . ::.: ::.. .:: . ::.. .:. KIAA18 VVSPELQTPLPSPEPSKPASV---SSPEPPKSVPVC---ESQKLAPVPSP-EPQKPAPVS 180 190 200 210 220 390 400 410 420 430 KIAA18 --------SDPEPRQE--VPTCTGPESRR--EVP-MCSDPEPRQEVPMCTGPEARQEVPM :.:.:... : :: : : : . ..::: : . ::.:. . KIAA18 PESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGPSPAAS-PESRKSART 230 240 250 260 270 280 440 450 460 470 480 490 KIAA18 YTDSEPRQEVPMYTDSEPRQEVPMYTGSEPRQEVPMYTGPESRQEVPMYTGPESRQEVLI :. :::. : . :: . : . :::. .: . : : . : KIAA18 -TSPEPRKPSPSESP-EPWKPFPAVS-PEPRRPAPAVS-PGSWKPGPPGSPRPWKSNPSA 290 300 310 320 330 500 510 520 530 540 550 KIAA18 RTDPESRQEIMCTGHESKQEVPICTDPISKQEDSMCTHAEINQKLPVATDFEFKLEALMC KIAA18 SSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTPSVSSASWKSSSVSPSSWKSPPASPES 340 350 360 370 380 390 917 residues in 1 query sequences 1986588 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:18:57 2008 done: Thu Dec 18 15:18:58 2008 Total Scan time: 0.620 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]