# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fh00676.fasta.nr -Q ../query/KIAA1839.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1839, 541 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7822091 sequences Expectation_n fit: rho(ln(x))= 5.9282+/-0.000195; mu= 8.9786+/- 0.011 mean_var=100.9914+/-19.691, 0's: 31 Z-trim: 46 B-trim: 449 in 1/65 Lambda= 0.127624 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|74760946|sp|Q96LT9.1|RBM40_HUMAN RecName: Full= ( 517) 3473 649.9 5e-184 gi|158260711|dbj|BAF82533.1| unnamed protein produ ( 516) 3456 646.8 4.4e-183 gi|75070522|sp|Q5R6C7.1|RBM40_PONAB RecName: Full= ( 517) 3455 646.6 5e-183 gi|122144028|sp|Q3MHP0.1|RBM40_BOVIN RecName: Full ( 516) 3248 608.5 1.5e-171 gi|73959977|ref|XP_547257.2| PREDICTED: similar to ( 729) 3244 607.9 3.2e-171 gi|194036602|ref|XP_001929365.1| PREDICTED: RNA-bi ( 515) 3235 606.1 7.7e-171 gi|160419225|sp|Q3UZ01.2|RBM40_MOUSE RecName: Full ( 514) 3040 570.2 5e-160 gi|160419222|sp|Q4G055.2|RBM40_RAT RecName: Full=R ( 515) 3034 569.1 1.1e-159 gi|74140935|dbj|BAE22060.1| unnamed protein produc ( 514) 3027 567.8 2.6e-159 gi|74145491|dbj|BAE36180.1| unnamed protein produc ( 513) 3021 566.7 5.6e-159 gi|71051116|gb|AAH98742.1| LOC686263 protein [Ratt ( 423) 2514 473.3 6.1e-131 gi|50949388|emb|CAB70897.2| hypothetical protein [ ( 292) 1959 370.9 2.7e-100 gi|90078134|dbj|BAE88747.1| unnamed protein produc ( 287) 1891 358.4 1.5e-96 gi|89130616|gb|AAI14289.1| RNA-binding region (RNP ( 505) 1832 347.8 4.4e-93 gi|47218419|emb|CAG12690.1| unnamed protein produc ( 609) 1732 329.4 1.8e-87 gi|74213761|dbj|BAB28770.3| unnamed protein produc ( 283) 1720 326.9 4.6e-87 gi|16741598|gb|AAH16603.1| Rnpc3 protein [Mus musc ( 258) 1469 280.7 3.5e-73 gi|109011644|ref|XP_001108341.1| PREDICTED: simila ( 447) 1337 256.6 1.1e-65 gi|55666002|emb|CAH72168.1| novel protein [Homo sa ( 185) 1211 233.1 5.4e-59 gi|115610644|ref|XP_783188.2| PREDICTED: similar t ( 518) 982 191.3 5.8e-46 gi|7019824|dbj|BAA90885.1| unnamed protein product ( 140) 932 181.6 1.3e-43 gi|156549742|ref|XP_001606002.1| PREDICTED: hypoth ( 478) 746 147.8 6.6e-33 gi|213624585|gb|AAI71301.1| RNA-binding region (RN ( 527) 741 146.9 1.3e-32 gi|166796977|gb|AAI59025.1| Rnpc3 protein [Xenopus ( 520) 738 146.3 2e-32 gi|115530784|emb|CAL49356.1| RNA-binding region (R ( 527) 738 146.3 2e-32 gi|210108290|gb|EEA56196.1| hypothetical protein B ( 425) 713 141.7 4.1e-31 gi|210085405|gb|EEA33874.1| hypothetical protein B ( 480) 677 135.1 4.4e-29 gi|156222256|gb|EDO43102.1| predicted protein [Nem ( 476) 652 130.5 1.1e-27 gi|215506859|gb|EEC16353.1| conserved hypothetical ( 440) 562 113.9 9.8e-23 gi|198425302|ref|XP_002121929.1| PREDICTED: simila ( 473) 550 111.7 4.8e-22 gi|194694084|gb|ACF81126.1| unknown [Zea mays] ( 450) 548 111.3 5.9e-22 gi|108707928|gb|ABF95723.1| RNA recognition motif ( 467) 544 110.6 1e-21 gi|23598415|gb|AAN35177.1| nucleolin-like protein ( 161) 518 105.4 1.3e-20 gi|193683830|ref|XP_001948838.1| PREDICTED: simila ( 436) 507 103.7 1.1e-19 gi|110762548|ref|XP_623250.2| PREDICTED: similar t ( 403) 501 102.6 2.2e-19 gi|222862278|gb|EEE99784.1| predicted protein [Pop ( 420) 482 99.1 2.6e-18 gi|222624851|gb|EEE58983.1| hypothetical protein O ( 560) 466 96.3 2.5e-17 gi|221114001|ref|XP_002155289.1| PREDICTED: simila ( 449) 461 95.3 3.9e-17 gi|190582658|gb|EDV22730.1| hypothetical protein T ( 466) 458 94.7 5.9e-17 gi|212511339|gb|EEB14343.1| conserved hypothetical ( 332) 445 92.2 2.4e-16 gi|20258828|gb|AAM13896.1| unknown protein [Arabid ( 442) 423 88.3 5e-15 gi|189235800|ref|XP_001808901.1| PREDICTED: simila ( 424) 407 85.3 3.7e-14 gi|222857521|gb|EEE95068.1| predicted protein [Pop ( 346) 390 82.1 2.8e-13 gi|157356156|emb|CAO50069.1| unnamed protein produ ( 277) 353 75.2 2.6e-11 gi|3249110|gb|AAC24093.1| T12M4.6 [Arabidopsis tha ( 467) 353 75.4 3.9e-11 gi|118089340|ref|XP_426256.2| PREDICTED: similar t ( 360) 343 73.5 1.2e-10 gi|149022081|gb|EDL78975.1| rCG26849, isoform CRA_ ( 413) 336 72.2 3.1e-10 gi|109469971|ref|XP_001054058.1| PREDICTED: simila ( 421) 336 72.2 3.2e-10 gi|81914521|sp|Q8JZV4.1|RBM41_MOUSE RecName: Full= ( 413) 333 71.7 4.6e-10 gi|123221855|emb|CAM21818.1| RNA binding motif pro ( 425) 333 71.7 4.7e-10 >>gi|74760946|sp|Q96LT9.1|RBM40_HUMAN RecName: Full=RNA- (517 aa) initn: 3473 init1: 3473 opt: 3473 Z-score: 3460.1 bits: 649.9 E(): 5e-184 Smith-Waterman score: 3473; 100.000% identity (100.000% similar) in 517 aa overlap (25-541:1-517) 10 20 30 40 50 60 KIAA18 HRALPRRVFEGLPLFGGAVLARRKMAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA :::::::::::::::::::::::::::::::::::: gi|747 MAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA 10 20 30 70 80 90 100 110 120 KIAA18 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA18 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC 100 110 120 130 140 150 190 200 210 220 230 240 KIAA18 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH 160 170 180 190 200 210 250 260 270 280 290 300 KIAA18 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ 220 230 240 250 260 270 310 320 330 340 350 360 KIAA18 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD 280 290 300 310 320 330 370 380 390 400 410 420 KIAA18 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK 340 350 360 370 380 390 430 440 450 460 470 480 KIAA18 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 400 410 420 430 440 450 490 500 510 520 530 540 KIAA18 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK 460 470 480 490 500 510 KIAA18 C : gi|747 C >>gi|158260711|dbj|BAF82533.1| unnamed protein product [ (516 aa) initn: 2002 init1: 2002 opt: 3456 Z-score: 3443.2 bits: 646.8 E(): 4.4e-183 Smith-Waterman score: 3456; 99.807% identity (99.807% similar) in 517 aa overlap (25-541:1-516) 10 20 30 40 50 60 KIAA18 HRALPRRVFEGLPLFGGAVLARRKMAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA :::::::::::::::::::::::::::::::::::: gi|158 MAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA 10 20 30 70 80 90 100 110 120 KIAA18 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA18 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC 100 110 120 130 140 150 190 200 210 220 230 240 KIAA18 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH 160 170 180 190 200 210 250 260 270 280 290 300 KIAA18 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ 220 230 240 250 260 270 310 320 330 340 350 360 KIAA18 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD :::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::: gi|158 RHVRKKRKIKDMLNTPLCPSHS-LHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD 280 290 300 310 320 330 370 380 390 400 410 420 KIAA18 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK 340 350 360 370 380 390 430 440 450 460 470 480 KIAA18 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 400 410 420 430 440 450 490 500 510 520 530 540 KIAA18 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK 460 470 480 490 500 510 KIAA18 C : gi|158 C >>gi|75070522|sp|Q5R6C7.1|RBM40_PONAB RecName: Full=RNA- (517 aa) initn: 3455 init1: 3455 opt: 3455 Z-score: 3442.2 bits: 646.6 E(): 5e-183 Smith-Waterman score: 3455; 99.226% identity (100.000% similar) in 517 aa overlap (25-541:1-517) 10 20 30 40 50 60 KIAA18 HRALPRRVFEGLPLFGGAVLARRKMAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA :::::::::::::::::::::::::::::::::::: gi|750 MAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA 10 20 30 70 80 90 100 110 120 KIAA18 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA18 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC 100 110 120 130 140 150 190 200 210 220 230 240 KIAA18 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH 160 170 180 190 200 210 250 260 270 280 290 300 KIAA18 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|750 APLPPTSPQPPEEPPLPEEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ 220 230 240 250 260 270 310 320 330 340 350 360 KIAA18 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD 280 290 300 310 320 330 370 380 390 400 410 420 KIAA18 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK 340 350 360 370 380 390 430 440 450 460 470 480 KIAA18 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD :::::::::::::::::::::::::::::::::::.::::::::::::::::::.::::: gi|750 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVEEKDLKYIFGRYVDFSSETRRIMFD 400 410 420 430 440 450 490 500 510 520 530 540 KIAA18 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|750 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK 460 470 480 490 500 510 KIAA18 C : gi|750 C >>gi|122144028|sp|Q3MHP0.1|RBM40_BOVIN RecName: Full=RNA (516 aa) initn: 1868 init1: 1868 opt: 3248 Z-score: 3236.2 bits: 608.5 E(): 1.5e-171 Smith-Waterman score: 3248; 93.230% identity (97.099% similar) in 517 aa overlap (25-541:1-516) 10 20 30 40 50 60 KIAA18 HRALPRRVFEGLPLFGGAVLARRKMAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA :::::::: .:::: .:::::::::::::::::::: gi|122 MAAPEQPLPMSRGCQNSSSLSPPRGDRTLLVRHLPA 10 20 30 70 80 90 100 110 120 KIAA18 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV :::::::::::::::::::: :::::::::::::::::::.:.::::::::::::::::: gi|122 ELTAEEKEDLLKYFGAQSVRDLSDKGRLKHTAFATFPNEKTAVKALTRLHQLKLLGHTLV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA18 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC :::::::::::::::. :.::::::::::::::::::: ::.::::::::::::::::: gi|122 VEFAKEQDRVHSPCPSLGTEKKKRSDDPVEDDKEKKELDCLTIENGIAPNHGLTFPLNSC 100 110 120 130 140 150 190 200 210 220 230 240 KIAA18 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|122 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITTRPPMYEDYMPLH 160 170 180 190 200 210 250 260 270 280 290 300 KIAA18 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ :::::::::::::::::::::::::.::::::.::::::::.:::::::::::::: ::: gi|122 APLPPTSPQPPEEPPLPDEDEELSSKESEYESSDDEDRQRMTKLMELANLQPKRPKPIKQ 220 230 240 250 260 270 310 320 330 340 350 360 KIAA18 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD :::::::::::::: : ::: ::::::::::::::::::::.::::::::: .::::: gi|122 RHVRKKRKIKDMLNIPSSASHS-LHPVLLPSDVFDQPQPVGNKKIEFHISTDMQVAFKKD 280 290 300 310 320 330 370 380 390 400 410 420 KIAA18 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK :::.:::::.: ::::::.::::::::::::.:::.::::::.::::::::::::::::: gi|122 LEKQQNCEEENSDLPATEADASNIGFGKIFPQPNLNITEEIKDDSDEMPSECISRRELEK 340 350 360 370 380 390 430 440 450 460 470 480 KIAA18 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|122 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 400 410 420 430 440 450 490 500 510 520 530 540 KIAA18 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: gi|122 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDSKEGKRK 460 470 480 490 500 510 KIAA18 C : gi|122 C >>gi|73959977|ref|XP_547257.2| PREDICTED: similar to RNA (729 aa) initn: 3243 init1: 3194 opt: 3244 Z-score: 3230.2 bits: 607.9 E(): 3.2e-171 Smith-Waterman score: 3244; 92.500% identity (96.923% similar) in 520 aa overlap (23-541:210-729) 10 20 30 40 50 KIAA18 HRALPRRVFEGLPLFGGAVLARRKMAAPEQPLA-ISRGCTSSSSLSPPRGDR :.:::::::: .:::: ::.::::::::: gi|739 ARRKNTLFPQPLWPGVLSLQALLASPSPSPREMAAPEQPLPPMSRGCQSSASLSPPRGDR 180 190 200 210 220 230 60 70 80 90 100 110 KIAA18 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 240 250 260 270 280 290 120 130 140 150 160 170 KIAA18 LKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNH :::::::::::::::::::::::: : :::::::::::::::::::: .:.:::::::: gi|739 LKLLGHTLVVEFAKEQDRVHSPCPPSDPEKKKRSDDPVEDDKEKKELGCITIENGIAPNH 300 310 320 330 340 350 180 190 200 210 220 230 KIAA18 GLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 GLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPP 360 370 380 390 400 410 240 250 260 270 280 290 KIAA18 MYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQ ::::::::::::::.:::::::::::::::::::.::::::.::::::::.::::::::: gi|739 MYEDYMPLHAPLPPASPQPPEEPPLPDEDEELSSKESEYESSDDEDRQRMTKLMELANLQ 420 430 440 450 460 470 300 310 320 330 340 350 KIAA18 PKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHIST :::::.:::.:::::.::::::.:: ::.:::::::::::::::::::::.::::::: gi|739 PKRPKAIKQHHVRKKQKIKDMLKTPSSASHGSLHPVLLPSDVFDQPQPVGNKKIEFHIST 480 490 500 510 520 530 360 370 380 390 400 410 KIAA18 DMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSE :: .::::::::::::::...:::: : :: :.:::::::::::.:::::::: :::::: gi|739 DMTSAFKKDLEKEQNCEEQSYDLPAPEGDAPNVGFGKIFPKPNLNITEEIKEDCDEMPSE 540 550 560 570 580 590 420 430 440 450 460 470 KIAA18 CISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFS ::::::::::::::::::::::::::::::::::.:::::::::::::::.::::::::: gi|739 CISRRELEKGRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQEKDLKFIFGRYVDFS 600 610 620 630 640 650 480 490 500 510 520 530 KIAA18 SETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPK 660 670 680 690 700 710 540 KIAA18 QDPKEGKRKC :: ::::::: gi|739 QDSKEGKRKC 720 >>gi|194036602|ref|XP_001929365.1| PREDICTED: RNA-bindin (515 aa) initn: 1746 init1: 1746 opt: 3235 Z-score: 3223.3 bits: 606.1 E(): 7.7e-171 Smith-Waterman score: 3235; 93.424% identity (97.292% similar) in 517 aa overlap (25-541:1-515) 10 20 30 40 50 60 KIAA18 HRALPRRVFEGLPLFGGAVLARRKMAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA :::::::. .:::: ::.:::::::::::::::::: gi|194 MAAPEQPIPMSRGCQSSASLSPPRGDRTLLVRHLPA 10 20 30 70 80 90 100 110 120 KIAA18 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA18 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC ::::::::.::::::.:..::::::::::::::::::: ::.::::::::::::::::: gi|194 VEFAKEQDQVHSPCPSSSTEKKKRSDDPVEDDKEKKELDCLTIENGIAPNHGLTFPLNSC 100 110 120 130 140 150 190 200 210 220 230 240 KIAA18 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH 160 170 180 190 200 210 250 260 270 280 290 300 KIAA18 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ :::::.::::::::::::: ::::.::::::.::::::::.:::::::::::::::::: gi|194 APLPPASPQPPEEPPLPDE--ELSSKESEYESSDDEDRQRMTKLMELANLQPKRPKTIKQ 220 230 240 250 260 270 310 320 330 340 350 360 KIAA18 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD ::.::::::::::::: ::::::::::::::::::::::::.::::::::::::::.: gi|194 RHARKKRKIKDMLNTPSSASHSSLHPVLLPSDVFDQPQPVGNKKIEFHISTDMPAAFKND 280 290 300 310 320 330 370 380 390 400 410 420 KIAA18 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK :::::: ::.: ::::. ::::: :::::::::::.:.:::::::::::::::::::::: gi|194 LEKEQNSEEQNCDLPASGVDASNKGFGKIFPKPNLSIAEEIKEDSDEMPSECISRRELEK 340 350 360 370 380 390 430 440 450 460 470 480 KIAA18 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|194 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFD 400 410 420 430 440 450 490 500 510 520 530 540 KIAA18 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: gi|194 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDSKEGKRK 460 470 480 490 500 510 KIAA18 C : gi|194 C >>gi|160419225|sp|Q3UZ01.2|RBM40_MOUSE RecName: Full=RNA (514 aa) initn: 2769 init1: 1796 opt: 3040 Z-score: 3029.3 bits: 570.2 E(): 5e-160 Smith-Waterman score: 3040; 88.953% identity (94.186% similar) in 516 aa overlap (25-540:1-514) 10 20 30 40 50 60 KIAA18 HRALPRRVFEGLPLFGGAVLARRKMAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA ::.:: :. .::: .:.:::::::::::::::::: gi|160 MAGPEPPMPLSRGGPGSASLSPPRGDRTLLVRHLPA 10 20 30 70 80 90 100 110 120 KIAA18 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA18 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC :::::::::::::: ::..::::: :: ::.:::::: :::::::::::::::::::: gi|160 VEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENGIAPNHGLTFPLNSC 100 110 120 130 140 150 190 200 210 220 230 240 KIAA18 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH 160 170 180 190 200 210 250 260 270 280 290 300 KIAA18 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ :::::::::::::::::::::.:::.::::::.:.:::::::.:::::::::::::: : gi|160 APLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLMELANLQPKRPKTEKP 220 230 240 250 260 270 310 320 330 340 350 360 KIAA18 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD :::::::::::::: : ::: ::::::::::::::: ::::.:::.:::.:::::.:: gi|160 RHVRKKRKIKDMLNIPSSASHS-LHPVLLPSDVFDQPQSVGNKKIEFNISTNMPAAFNKD 280 290 300 310 320 330 370 380 390 400 410 420 KIAA18 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK :: . : ::.: : : : .: :: :::::::::::.::::: :::::.::. :::.:::: gi|160 LETQPNNEEENSDSPDTGLD-SNTGFGKIFPKPNLNITEEITEDSDEIPSQFISRKELEK 340 350 360 370 380 390 430 440 450 460 470 480 KIAA18 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD ::::::::::::::::::::::::::::::::.::::::::.:::::::::::::::::: gi|160 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 400 410 420 430 440 450 490 500 510 520 530 540 KIAA18 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK ::::::::::::::.:::::::::::::::::::::::::::::::::::::: :::::: gi|160 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDSKEGKRK 460 470 480 490 500 510 KIAA18 C >>gi|160419222|sp|Q4G055.2|RBM40_RAT RecName: Full=RNA-b (515 aa) initn: 1751 init1: 1751 opt: 3034 Z-score: 3023.3 bits: 569.1 E(): 1.1e-159 Smith-Waterman score: 3034; 88.178% identity (94.961% similar) in 516 aa overlap (25-540:1-515) 10 20 30 40 50 60 KIAA18 HRALPRRVFEGLPLFGGAVLARRKMAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA ::.:: . .::: .:.:::::::::::::::::: gi|160 MAVPEPSMPLSRGGPGSASLSPPRGDRTLLVRHLPA 10 20 30 70 80 90 100 110 120 KIAA18 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA18 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC :::::::::::: ::.:..::::: :: ::.:::::: :::::::::::::::::::: gi|160 VEFAKEQDRVHSSCPASNAEKKKRLDDTVENDKEKKEPDVLTVENGIAPNHGLTFPLNSC 100 110 120 130 140 150 190 200 210 220 230 240 KIAA18 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::. :: gi|160 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYVQLH 160 170 180 190 200 210 250 260 270 280 290 300 KIAA18 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ :::::::::::::::::::::.:::.::::::.:.::::::::::::::.:::::::.: gi|160 APLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNKLMELANFQPKRPKTVKP 220 230 240 250 260 270 310 320 330 340 350 360 KIAA18 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD :::::::::::::..: :. .:::::::::::::::::::::.:::.:::..:::..:: gi|160 RHVRKKRKIKDMLTVP-SPASQSLHPVLLPSDVFDQPQPVGNKKIEFNISTNVPAALNKD 280 290 300 310 320 330 370 380 390 400 410 420 KIAA18 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK :: ::: :::: : : : .: :: ::::.:::::..::::::::::::::. :::::::: gi|160 LETEQNNEEKNSDSPDTGLDDSNTGFGKLFPKPNVNITEEIKEDSDEMPSQFISRRELEK 340 350 360 370 380 390 430 440 450 460 470 480 KIAA18 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD ::::::::::::::::::::::::::::::::.::::::::.:::::::::::::::::: gi|160 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 400 410 420 430 440 450 490 500 510 520 530 540 KIAA18 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK ::::::::::::::.::::::::::::::::::::::::::::::::::::.: :::::: gi|160 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKHDSKEGKRK 460 470 480 490 500 510 KIAA18 C >>gi|74140935|dbj|BAE22060.1| unnamed protein product [M (514 aa) initn: 2756 init1: 1791 opt: 3027 Z-score: 3016.3 bits: 567.8 E(): 2.6e-159 Smith-Waterman score: 3027; 88.566% identity (93.992% similar) in 516 aa overlap (25-540:1-514) 10 20 30 40 50 60 KIAA18 HRALPRRVFEGLPLFGGAVLARRKMAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA ::.:: :. .::: .:.:::::::::::::::::: gi|741 MAGPEPPMPLSRGGPGSASLSPPRGDRTLLVRHLPA 10 20 30 70 80 90 100 110 120 KIAA18 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ELTAKEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA18 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC :::::::::::::: ::..::::: :: ::.:::::: :::::::::::::::::::: gi|741 VEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENGIAPNHGLTFPLNSC 100 110 120 130 140 150 190 200 210 220 230 240 KIAA18 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH 160 170 180 190 200 210 250 260 270 280 290 300 KIAA18 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ :::::::::::::::::::::.:::.::::::.:.:::::::.:::::::::::::: : gi|741 APLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLMELANLQPKRPKTEKP 220 230 240 250 260 270 310 320 330 340 350 360 KIAA18 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD :::::::::::::: : ::: ::::::::::::::: ::::.:::.:::.:::::.:: gi|741 RHVRKKRKIKDMLNIPSSASHS-LHPVLLPSDVFDQPQSVGNKKIEFNISTNMPAAFNKD 280 290 300 310 320 330 370 380 390 400 410 420 KIAA18 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK :: . : ::.: : : : .: :: :::::::::::.::::: :::::.::. :::.:::: gi|741 LETQPNNEEENSDSPDTGLD-SNTGFGKIFPKPNLNITEEITEDSDEIPSQFISRKELEK 340 350 360 370 380 390 430 440 450 460 470 480 KIAA18 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD ::::::::::::::::::::::::::: ::::.::::::::.:::::::::::::::::: gi|741 GRISREEMETLSVFRSYEPGEPNCRIYEKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 400 410 420 430 440 450 490 500 510 520 530 540 KIAA18 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK ::::::::::::::.:::::::::::::::::::::::::::::::::::::: :::::: gi|741 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDSKEGKRK 460 470 480 490 500 510 KIAA18 C >>gi|74145491|dbj|BAE36180.1| unnamed protein product [M (513 aa) initn: 2656 init1: 1796 opt: 3021 Z-score: 3010.4 bits: 566.7 E(): 5.6e-159 Smith-Waterman score: 3021; 88.760% identity (93.992% similar) in 516 aa overlap (25-540:1-513) 10 20 30 40 50 60 KIAA18 HRALPRRVFEGLPLFGGAVLARRKMAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPA ::.:: :. .::: .:.:::::::::::::::::: gi|741 MAGPEPPMPLSRGGPGSASLSPPRGDRTLLVRHLPA 10 20 30 70 80 90 100 110 120 KIAA18 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA18 VEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSC :::::::::::::: ::..::::: :: ::.:::::: :::::::::::::::::::: gi|741 VEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVENGIAPNHGLTFPLNSC 100 110 120 130 140 150 190 200 210 220 230 240 KIAA18 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLH 160 170 180 190 200 210 250 260 270 280 290 300 KIAA18 APLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQ :::::::::::::::::::::.:::.::::::.:.:::::::.:::::::::::::: : gi|741 APLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLMELANLQPKRPKTEKP 220 230 240 250 260 270 310 320 330 340 350 360 KIAA18 RHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKD :::::::::::::: : ::: ::::::::::::::: ::::.:::.:::.:::::.:: gi|741 RHVRKKRKIKDMLNIPSSASHS-LHPVLLPSDVFDQPQSVGNKKIEFNISTNMPAAFNKD 280 290 300 310 320 330 370 380 390 400 410 420 KIAA18 LEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEK :: . : ::.: : : : .: :: :::::::::::.::::: :::::.::. :::.:::: gi|741 LETQPNNEEENSDSPDTGLD-SNTGFGKIFPKPNLNITEEITEDSDEIPSQFISRKELEK 340 350 360 370 380 390 430 440 450 460 470 480 KIAA18 GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD ::::::::::::::::::::::::::::::::.::::::::.:::::::::::::::::: gi|741 GRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFD 400 410 420 430 440 450 490 500 510 520 530 540 KIAA18 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK ::::::::::::::.::::::::::::::::::::::::::: :::::::::: :::::: gi|741 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV-FARSARPKQDSKEGKRK 460 470 480 490 500 510 KIAA18 C 541 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 21:55:47 2009 done: Thu Mar 5 21:59:40 2009 Total Scan time: 1486.640 Total Display time: 0.230 Function used was FASTA [version 34.26.5 April 26, 2007]