hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14153831/chunk_1/iprscan-20080502-14153831.nocrc
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Query sequence: KIAA1839
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     69.7    8.5e-18   2
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     65.8    1.1e-17   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/2      53   121 ..     1    74 []    32.5  2.3e-08
PF00076.12.ls   1/2      53   121 ..     1    74 []    34.5  3.5e-07
PF00076.12.fs   2/2     446   522 ..     1    74 []    33.3  1.4e-08
PF00076.12.ls   2/2     446   522 ..     1    74 []    35.3    2e-07

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 2, from 53 to 121: score 32.5, E = 2.3e-08
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V+ Lp ++t e+ +dl + fG   s+++  D    +gr k  aF 
    KIAA1839    53    LLVRHLPAELTAEEKEDLLKYFGAQ-SVRVLSD----KGRLKHTAFA 94   

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F +e +A kAl  l+  +l g++l v   
    KIAA1839    95 TFPNEKAAIKALTRLHQLKLLGHTLVV    121  

PF00076.12.ls: domain 1 of 2, from 53 to 121: score 34.5, E = 3.5e-07
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V+ Lp ++t e+ +dl + fG   s+++  D    +gr k  aF 
    KIAA1839    53    LLVRHLPAELTAEEKEDLLKYFGAQ-SVRVLSD----KGRLKHTAFA 94   

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F +e +A kAl  l+  +l g++l v   
    KIAA1839    95 TFPNEKAAIKALTRLHQLKLLGHTLVV    121  

PF00076.12.fs: domain 2 of 2, from 446 to 522: score 33.3, E = 1.4e-08
                   *->lfVgNLppdtteedLkdlFskfGpi..esikivrD.ttretgrskGf
                      ++V+NL + + e+dLk +F+ + ++++e  +i+ D   +  gr kG 
    KIAA1839   446    IYVKNLAKHVQEKDLKYIFGRYVDFssETQRIMFDiRLMKEGRMKGQ 492  

                   aFVeFedeedAekAldalnGkelggrelrv<-*
                   aF+   +e +A+kAl++ nG+ l g+++ v   
    KIAA1839   493 AFIGLPNEKAAAKALKEANGYVLFGKPMVV    522  

PF00076.12.ls: domain 2 of 2, from 446 to 522: score 35.3, E = 2e-07
                   *->lfVgNLppdtteedLkdlFskfGpi..esikivrD.ttretgrskGf
                      ++V+NL + + e+dLk +F+ + ++++e  +i+ D   +  gr kG 
    KIAA1839   446    IYVKNLAKHVQEKDLKYIFGRYVDFssETQRIMFDiRLMKEGRMKGQ 492  

                   aFVeFedeedAekAldalnGkelggrelrv<-*
                   aF+   +e +A+kAl++ nG+ l g+++ v   
    KIAA1839   493 AFIGLPNEKAAAKALKEANGYVLFGKPMVV    522  

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