hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14153831/chunk_1/iprscan-20080502-14153831.nocrc
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Query sequence: KIAA1839
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 101.2    1.2e-25   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/2      52   122 ..     1   121 []    46.9  2.7e-09
SM00360    2/2     445   523 ..     1   121 []    54.3  1.6e-11

Alignments of top-scoring domains:
SM00360: domain 1 of 2, from 52 to 122: score 46.9, E = 2.7e-09
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      tl V+ L  p + t e+ ++l               + fG  +svr+
    KIAA1839    52    TLLVRHL--PAELTAEEKEDLL--------------KYFG-AQSVRV 81   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + dk                       G+ k  aF +F +e +A kA  +
    KIAA1839    82 LSDK-----------------------GRLKHTAFATFPNEKAAIKA--L 106  

                   ealnaskGkeledgGrptlglrVe<-*
                     l+     +l   G++   l Ve   
    KIAA1839   107 TRLH---QLKL--LGHT---LVVE    122  

SM00360: domain 2 of 2, from 445 to 523: score 54.3, E = 1.6e-11
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +++V+NL   + v e+dL+ +F              +++ +  s   
    KIAA1839   445    RIYVKNL--AKHVQEKDLKYIF--------------GRYVDFSSETQ 475  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +   d                   ++ G+ kG aF+   +e +A+kA  +
    KIAA1839   476 RIMFD----------------IRLMKEGRMKGQAFIGLPNEKAAAKA--L 507  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++ n   G++l   G+p   + V+   
    KIAA1839   508 KEAN---GYVL--FGKP---MVVQ    523  

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