hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14205438/chunk_1/iprscan-20080502-14205438.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1842 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07707.5.ls BTB And C-terminal Kelch 143.8 4.2e-40 1 PF07707.5.fs BTB And C-terminal Kelch 141.9 1.6e-39 1 PF01344.15.ls Kelch motif 111.1 3e-30 3 PF01344.15.fs Kelch motif 109.3 3.1e-30 4 PF00651.21.fs BTB/POZ domain 74.6 2.5e-20 1 PF07646.5.ls Kelch motif 53.2 8.1e-13 4 PF07646.5.fs Kelch motif 46.9 6.6e-12 4 PF00651.21.ls BTB/POZ domain 23.0 3.1e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.ls 1/1 1 72 [. 1 135 [] 23.0 3.1e-05 PF00651.21.fs 1/1 1 72 [. 45 135 .] 74.6 2.5e-20 PF07707.5.fs 1/1 77 179 .. 1 103 [] 141.9 1.6e-39 PF07707.5.ls 1/1 77 179 .. 1 103 [] 143.8 4.2e-40 PF01344.15.ls 1/3 249 302 .. 1 45 [] 24.8 0.00027 PF01344.15.fs 1/4 256 302 .. 8 45 .] 26.2 1.3e-06 PF01344.15.fs 2/4 304 353 .. 1 45 [] 50.4 1.8e-13 PF07646.5.fs 2/4 304 353 .. 1 54 [] 31.6 1e-07 PF07646.5.ls 2/4 304 353 .. 1 54 [] 33.5 6.8e-07 PF01344.15.ls 2/3 304 353 .. 1 45 [] 52.4 1.4e-12 PF01344.15.ls 3/3 395 441 .. 1 45 [] 33.9 5.2e-07 PF01344.15.fs 3/4 395 441 .. 1 45 [] 31.9 3.2e-08 Alignments of top-scoring domains: PF00651.21.ls: domain 1 of 1, from 1 to 72: score 23.0, E = 3.1e-05 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal + ++ KIAA1842 1 ---------------------------R-----------------SM 3 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft++ es++ e+ + +v++e++ ++L+++Yt+++++t KIAA1842 4 FTSG------LTESTQK-EVRIVGVEAESMDLVLNYAYTSRVILT----- 41 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* e+nv++l+ aA + +qips++d+C +++i +l KIAA1842 42 ------EANVQALFTAA-SIFQIPSIQDQCAKYMISHL 72 PF00651.21.fs: domain 1 of 1, from 1 to 72: score 74.6, E = 2.5e-20 *->kalFtgqfkesiteeessvsseieledvspedfealLefiYtgelsi +++Ft++ es++ e+ + +v++e++ ++L+++Yt+++++ KIAA1842 1 RSMFTSG------LTESTQK-EVRIVGVEAESMDLVLNYAYTSRVIL 40 tqdqksPssckseenvedlLaaAadllqipslvdaCeefliksl<-* t e+nv++l+ aA + +qips++d+C +++i +l KIAA1842 41 T-----------EANVQALFTAA-SIFQIPSIQDQCAKYMISHL 72 PF07707.5.fs: domain 1 of 1, from 77 to 179: score 141.9, E = 1.6e-39 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie +g+++fAd+yg eL ++++++i++ Fl V k++EFlqL+k+qLi+ KIAA1842 77 SIGVFIFADHYGHQELGDRSKEYIRKKFLCVTKEQEFLQLTKDQLIS 123 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLL.shVRLpLLspk +L sD+LnV++Ee+V+e ++rW h++++R++hlpe++ +++R+pL+ + KIAA1842 124 ILDSDDLNVDREEHVYESIIRWFEHEQNEREVHLPEIFaKCIRFPLMEDT 173 yLlevve<-* ++ + + KIAA1842 174 FIEK-IP 179 PF07707.5.ls: domain 1 of 1, from 77 to 179: score 143.8, E = 4.2e-40 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie +g+++fAd+yg eL ++++++i++ Fl V k++EFlqL+k+qLi+ KIAA1842 77 SIGVFIFADHYGHQELGDRSKEYIRKKFLCVTKEQEFLQLTKDQLIS 123 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLL.shVRLpLLspk +L sD+LnV++Ee+V+e ++rW h++++R++hlpe++ +++R+pL+ + KIAA1842 124 ILDSDDLNVDREEHVYESIIRWFEHEQNEREVHLPEIFaKCIRFPLMEDT 173 yLlevve<-* ++ + + KIAA1842 174 FIEK-IP 179 PF01344.15.ls: domain 1 of 3, from 249 to 302: score 24.8, E = 0.00027 *->pRsgagvvvldgkiYviGGydg.........qslnsvevYDpetntW R v+ d+ iY++GGy +++++ + ++ + n++++YD++tn+W KIAA1842 249 LREVGILVSPDNDIYIAGGYRPsssevsidhKAENDFWMYDHSTNRW 295 tklpsmp<-* ps+ KIAA1842 296 LSKPSLL 302 PF01344.15.fs: domain 1 of 4, from 256 to 302: score 26.2, E = 1.3e-06 *->vvldgkiYviGGydg.........qslnsvevYDpetntWtklpsmp v+ d+ iY++GGy +++++ + ++ + n++++YD++tn+W ps+ KIAA1842 256 VSPDNDIYIAGGYRPsssevsidhKAENDFWMYDHSTNRWLSKPSLL 302 <-* KIAA1842 - - PF01344.15.fs: domain 2 of 4, from 304 to 353: score 50.4, E = 1.8e-13 *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp +R g+ v++ gk+Y+iGG+ ++++++sl+sve+YD ++n+Wt + KIAA1842 304 ARIGCKLVYCCGKMYAIGGRVYegdgrNSLKSVECYDSRENCWTTVC 350 smp<-* mp KIAA1842 351 AMP 353 PF07646.5.fs: domain 2 of 4, from 304 to 353: score 31.6, E = 1e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r ++ +v ++gk+y +GG+ ++g+g s+ ++ ++d ++n+W KIAA1842 304 ARIGCKLVYCCGKMYAIGGR----VYEGDGRNSLKSVECYDSRENCW 346 eklpalp<-* + ++a+p KIAA1842 347 TTVCAMP 353 PF07646.5.ls: domain 2 of 4, from 304 to 353: score 33.5, E = 6.8e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r ++ +v ++gk+y +GG+ ++g+g s+ ++ ++d ++n+W KIAA1842 304 ARIGCKLVYCCGKMYAIGGR----VYEGDGRNSLKSVECYDSRENCW 346 eklpalp<-* + ++a+p KIAA1842 347 TTVCAMP 353 PF01344.15.ls: domain 2 of 3, from 304 to 353: score 52.4, E = 1.4e-12 *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp +R g+ v++ gk+Y+iGG+ ++++++sl+sve+YD ++n+Wt + KIAA1842 304 ARIGCKLVYCCGKMYAIGGRVYegdgrNSLKSVECYDSRENCWTTVC 350 smp<-* mp KIAA1842 351 AMP 353 PF01344.15.ls: domain 3 of 3, from 395 to 441: score 33.9, E = 5.2e-07 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp pR ++v+++ iY i G +g++q++ +ve+YD e n+Wt+ + p KIAA1842 395 PRIQGLAAVYKDSIYYIAGTCGnhQRMFTVEAYDIELNKWTRKKDFP 441 <-* KIAA1842 - - PF01344.15.fs: domain 3 of 4, from 395 to 441: score 31.9, E = 3.2e-08 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp pR ++v+++ iY i G +g++q++ +ve+YD e n+Wt+ + p KIAA1842 395 PRIQGLAAVYKDSIYYIAGTCGnhQRMFTVEAYDIELNKWTRKKDFP 441 <-* KIAA1842 - - //