hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14241885/chunk_1/iprscan-20080502-14241885.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1844 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00456 39.9 3.4e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00456 1/1 62 94 .. 1 34 [] 39.9 3.4e-07 Alignments of top-scoring domains: SM00456: domain 1 of 1, from 62 to 94: score 39.9, E = 3.4e-07 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* ++ + W e+++ + G++YYyN T +qWekP e KIAA1844 62 DSADDWSEHISSS-GKKYYYNCRTEVSQWEKPKE 94 //