hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14273143/chunk_1/iprscan-20080502-14273143.nocrc
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Query sequence: KIAA1846
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00501.18.fs AMP-binding enzyme                          235.1    1.4e-67   1
PF00501.18.ls AMP-binding enzyme                           24.0    1.2e-08   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00501.18.fs   1/1       1   245 [.   142   377 .]   235.1  1.4e-67
PF00501.18.ls   1/1       1   245 [.     1   377 []    24.0  1.2e-08

Alignments of top-scoring domains:
PF00501.18.fs: domain 1 of 1, from 1 to 245: score 235.1, E = 1.4e-67
                   *->pllhfdgsvweifgpLlaGatlvlvpkfdryrdpealldliekykvT
                      ++++++g+ + ++gpL++Gat vl++  + y+++++ ++++e+ k++
    KIAA1846     1    DIGWITGHSYVVYGPLCNGATSVLFESTPVYPNAGRYWETVERLKIN 47   

                   vlflvPtllrlllkape.....edlssLrlvlsgGealppelarrlrerf
                    ++++Pt++rlllk+++   +++d ssLr++ s+Ge+++ e++++l++++
    KIAA1846    48 QFYGAPTAVRLLLKYGDawvkkYDRSSLRTLGSVGEPINCEAWEWLHRVV 97   

                   gsggvrlvngYGpTEttvvatanppg.p.....pgsiGrPlpgvevyvlD
                   g+ +++lv+++++TEt+++++a++p +++ +  p  + rP++g+  +++D
    KIAA1846    98 GDSRCTLVDTWWQTETGGICIAPRPSeEgaeilPAMAMRPFFGIVPVLMD 147  

                   eeg.qpvppGevGELyirG.wpgvarGYlnrPelTaerFvadgwgpGeRm
                   e g+ + + ++ G L+i+  wpg+ar  ++++++  +++++   g    +
    KIAA1846   148 EKGsVVEGSNVSGALCISQaWPGMARTIYGDHQRFVDAYFKAYPG----Y 193  

                   YrTGDlgrwdpDGyleilGRkDdqvKirGerIepgEiEavLlahPgVaeA
                   Y TGD +++++ Gy+ i+GR+Dd+++i+G+r +++EiE++++ hP+V e+
    KIAA1846   194 YFTGDGAYRTEGGYYQITGRMDDVINISGHRLGTAEIEDAIADHPAVPES 243  

                   aV<-*
                   aV   
    KIAA1846   244 AV    245  

PF00501.18.ls: domain 1 of 1, from 1 to 245: score 24.0, E = 1.2e-08
                   *->TYrELderanrlAaaLralGvgpGdrVaillpnspelvvailAvlka
                                                                     
    KIAA1846     -    ----------------------------------------------- -    

                   GaayvPldpsypaerlayiledsgakvlltddallalsepppvdpddlAy
                                                                     
    KIAA1846     - -------------------------------------------------- -    

                   iiYTSGTTGkPKGVmltHrnlvnlvaalarflpddaervllllppllhfd
                                                               ++++++
    KIAA1846     1 --------------------------------------------DIGWIT 6    

                   gsvweifgpLlaGatlvlvpkfdryrdpealldliekykvTvlflvPtll
                   g+ + ++gpL++Gat vl++  + y+++++ ++++e+ k++ ++++Pt++
    KIAA1846     7 GHSYVVYGPLCNGATSVLFESTPVYPNAGRYWETVERLKINQFYGAPTAV 56   

                   rlllkape.....edlssLrlvlsgGealppelarrlrerfgsggvrlvn
                   rlllk+++   +++d ssLr++ s+Ge+++ e++++l++++g+ +++lv+
    KIAA1846    57 RLLLKYGDawvkkYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVD 106  

                   gYGpTEttvvatanppg.p.....pgsiGrPlpgvevyvlDeeg.qpvpp
                   ++++TEt+++++a++p +++ +  p  + rP++g+  +++De g+ + + 
    KIAA1846   107 TWWQTETGGICIAPRPSeEgaeilPAMAMRPFFGIVPVLMDEKGsVVEGS 156  

                   GevGELyirG.wpgvarGYlnrPelTaerFvadgwgpGeRmYrTGDlgrw
                   ++ G L+i+  wpg+ar  ++++++  +++++   g    +Y TGD +++
    KIAA1846   157 NVSGALCISQaWPGMARTIYGDHQRFVDAYFKAYPG----YYFTGDGAYR 202  

                   dpDGyleilGRkDdqvKirGerIepgEiEavLlahPgVaeAaV<-*
                   ++ Gy+ i+GR+Dd+++i+G+r +++EiE++++ hP+V e+aV   
    KIAA1846   203 TEGGYYQITGRMDDVINISGHRLGTAEIEDAIADHPAVPESAV    245  

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