hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14322974/chunk_1/iprscan-20080502-14322974.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1849 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01843.9.ls DIL domain 150.1 5.4e-42 1 PF01843.9.fs DIL domain 148.1 2.1e-41 1 PF00788.13.ls Ras association (RalGDS/AF-6) domain 95.5 1.5e-25 1 PF00788.13.fs Ras association (RalGDS/AF-6) domain 93.5 5.8e-25 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 54.8 9.3e-15 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 56.8 6.6e-14 1 PF00498.16.fs FHA domain 31.2 1.3e-08 1 PF00498.16.ls FHA domain 25.6 0.00016 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00788.13.ls 1/1 102 205 .. 1 97 [] 95.5 1.5e-25 PF00788.13.fs 1/1 102 205 .. 1 97 [] 93.5 5.8e-25 PF00498.16.ls 1/1 320 387 .. 1 94 [] 25.6 0.00016 PF00498.16.fs 1/1 320 387 .. 6 94 .] 31.2 1.3e-08 PF01843.9.fs 1/1 674 783 .. 1 113 [] 148.1 2.1e-41 PF01843.9.ls 1/1 674 783 .. 1 113 [] 150.1 5.4e-42 PF00595.14.ls 1/1 1015 1097 .. 1 86 [] 56.8 6.6e-14 PF00595.14.fs 1/1 1015 1097 .. 1 86 [] 54.8 9.3e-15 Alignments of top-scoring domains: PF00788.13.ls: domain 1 of 1, from 102 to 205: score 95.5, E = 1.5e-25 *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp ++gvl+V+g++ + gt+yk++l++ +++a+e+++++L+++ ld+++ KIAA1849 102 APGVLKVFGDSVCTGThYKSVLATGTSSARELVKEALERYALDPRQA 148 edyvLvEvslvlerggeer.....rvLpddEkPlqiqlqlkrdaq.rsrF + yvL+ v+++ ++ g+ ++ + rv++d+EkPl+iq+ +k++++ ++rF KIAA1849 149 GQYVLCDVVGQAGDAGQRWqarcfRVFGDSEKPLLIQELWKPREGlSRRF 198 lLrrred<-* Lr+r+d KIAA1849 199 ELRKRSD 205 PF00788.13.fs: domain 1 of 1, from 102 to 205: score 93.5, E = 5.8e-25 *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp ++gvl+V+g++ + gt+yk++l++ +++a+e+++++L+++ ld+++ KIAA1849 102 APGVLKVFGDSVCTGThYKSVLATGTSSARELVKEALERYALDPRQA 148 edyvLvEvslvlerggeer.....rvLpddEkPlqiqlqlkrdaq.rsrF + yvL+ v+++ ++ g+ ++ + rv++d+EkPl+iq+ +k++++ ++rF KIAA1849 149 GQYVLCDVVGQAGDAGQRWqarcfRVFGDSEKPLLIQELWKPREGlSRRF 198 lLrrred<-* Lr+r+d KIAA1849 199 ELRKRSD 205 PF00498.16.ls: domain 1 of 1, from 320 to 387: score 25.6, E = 0.00016 *->vtiGRdsdsddilldddqdiqldgsiSrrHaeieykdggvglelafr +s+ ++ l+++d i + H++i++++ ++++ a+r KIAA1849 320 -----SSKPSISLSAPD--------ILPLHCTIRRQPLPDSGQAAGR 353 paqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-* + l++ +++ ++vN+ ++ + ++v+L++Gd+++lG KIAA1849 354 L--------VLEPIPGAH----ISVNFSEV-GHRTVVLHHGDLLSLG 387 PF00498.16.fs: domain 1 of 1, from 320 to 387: score 31.2, E = 1.3e-08 *->dsdsddilldddqdiqldgsiSrrHaeieykdggvglelafrpaqvk +s+ ++ l+++d i + H++i++++ ++++ a+r+ KIAA1849 320 SSKPSISLSAPD--------ILPLHCTIRRQPLPDSGQAAGRL---- 354 efgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-* l++ +++ ++vN+ ++ + ++v+L++Gd+++lG KIAA1849 355 ----VLEPIPGAH----ISVNFSEV-GHRTVVLHHGDLLSLG 387 PF01843.9.fs: domain 1 of 1, from 674 to 783: score 148.1, E = 2.1e-41 *->qlfkQlFsfiNaqlfNsLllrrd.aacCswsrGmqirynlsqLeeWc q+ ++lF+f++ +l+N+Ll r+++++c++w rG+q +++l+qL eW+ KIAA1849 674 QMLAYLFFFSGTLLLNQLLDRGPsLSCFHWPRGVQACARLQQLLEWM 720 reagledagdLawdeLeplrQavqLLqvkkktkedisldeiicdlCpaLn r+ag+++a +++++++l+++ +LL++++++++++s++++++ + paL+ KIAA1849 721 RSAGFGAA---GEHFFQKLSCTLNLLATPRAQLIQMSWTALRAAF-PALS 766 paQlykiLtlYkpddye<-* paQl+++Lt+Y+++ + KIAA1849 767 PAQLHRLLTHYQLASAM 783 PF01843.9.ls: domain 1 of 1, from 674 to 783: score 150.1, E = 5.4e-42 *->qlfkQlFsfiNaqlfNsLllrrd.aacCswsrGmqirynlsqLeeWc q+ ++lF+f++ +l+N+Ll r+++++c++w rG+q +++l+qL eW+ KIAA1849 674 QMLAYLFFFSGTLLLNQLLDRGPsLSCFHWPRGVQACARLQQLLEWM 720 reagledagdLawdeLeplrQavqLLqvkkktkedisldeiicdlCpaLn r+ag+++a +++++++l+++ +LL++++++++++s++++++ + paL+ KIAA1849 721 RSAGFGAA---GEHFFQKLSCTLNLLATPRAQLIQMSWTALRAAF-PALS 766 paQlykiLtlYkpddye<-* paQl+++Lt+Y+++ + KIAA1849 767 PAQLHRLLTHYQLASAM 783 PF00595.14.ls: domain 1 of 1, from 1015 to 1097: score 56.8, E = 6.6e-14 *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea +v le+ +++glG+ + d+ +++ +++g+++ +lpG ++A+a KIAA1849 1015 TVELER--GPSGLGMGLI---DGMHthlgAPGLYIQTLLPG-SPAAA 1055 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +GrL GD+Il+vNG +l +l ++av++++ g+ + + +v+ KIAA1849 1056 DGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGK-KMRFLVA 1097 PF00595.14.fs: domain 1 of 1, from 1015 to 1097: score 54.8, E = 9.3e-15 *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea +v le+ +++glG+ + d+ +++ +++g+++ +lpG ++A+a KIAA1849 1015 TVELER--GPSGLGMGLI---DGMHthlgAPGLYIQTLLPG-SPAAA 1055 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +GrL GD+Il+vNG +l +l ++av++++ g+ + + +v+ KIAA1849 1056 DGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGK-KMRFLVA 1097 //