hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14341241/chunk_1/iprscan-20080502-14341241.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1850
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02338.9.fs OTU-like cysteine protease                     116.1    1.3e-33   1
PF02338.9.ls OTU-like cysteine protease                     117.9    2.8e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02338.9.fs   1/1     228   369 ..     1   157 []   116.1  1.3e-33
PF02338.9.ls   1/1     228   369 ..     1   157 []   117.9  2.8e-32

Alignments of top-scoring domains:
PF02338.9.fs: domain 1 of 1, from 228 to 369: score 116.1, E = 1.3e-33
                   *->pgDGnCLfravsdqlgldadkdvgdqelheelRemvsglveylrrwe
                       gDG+CL +avs++l        g++  +++lRe++   +++++   
    KIAA1850   228    DGDGHCLVHAVSRALV-------GRELFWHALRENL---KQHFQ--- 261  

                   edel.aenredfskfleedsGDspdesfeeYikriskdgaWGgeW.....
                     ++ a+++++f++f++                      +W++++++ ++
    KIAA1850   262 --QHlARYQALFHDFIDAA--------------------EWEDIInecdp 289  

                   ........y.SLEnieiqAlahilrvpIivyd.l........ykl.qsgr
                      ++++ + +L+ni+i+ la++l++pIi++d+l++ +++++y+ ++ ++
    KIAA1850   290 lfvppegvPlGLRNIHIFGLANVLHRPIILLDsLsgmrssgdYSAtFLPG 339  

                   itvfieiygkylplnkkkpirlsylghLeglgeHY<-*
                    +   +++gk+++lnk+ +i +s++g     ++HY   
    KIAA1850   340 LIPAEKCTGKDGHLNKPICIAWSSSG-----RNHY    369  

PF02338.9.ls: domain 1 of 1, from 228 to 369: score 117.9, E = 2.8e-32
                   *->pgDGnCLfravsdqlgldadkdvgdqelheelRemvsglveylrrwe
                       gDG+CL +avs++l        g++  +++lRe++   +++++   
    KIAA1850   228    DGDGHCLVHAVSRALV-------GRELFWHALRENL---KQHFQ--- 261  

                   edel.aenredfskfleedsGDspdesfeeYikriskdgaWGgeW.....
                     ++ a+++++f++f++                      +W++++++ ++
    KIAA1850   262 --QHlARYQALFHDFIDAA--------------------EWEDIInecdp 289  

                   ........y.SLEnieiqAlahilrvpIivyd.l........ykl.qsgr
                      ++++ + +L+ni+i+ la++l++pIi++d+l++ +++++y+ ++ ++
    KIAA1850   290 lfvppegvPlGLRNIHIFGLANVLHRPIILLDsLsgmrssgdYSAtFLPG 339  

                   itvfieiygkylplnkkkpirlsylghLeglgeHY<-*
                    +   +++gk+++lnk+ +i +s++g     ++HY   
    KIAA1850   340 LIPAEKCTGKDGHLNKPICIAWSSSG-----RNHY    369  

//