hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14355568/chunk_1/iprscan-20080502-14355568.nocrc
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Query sequence: KIAA1851
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             58.9    1.6e-14   6
PF00560.23.fs Leucine Rich Repeat                             47.7    5.5e-12   6
PF01462.9.ls Leucine rich repeat N-terminal domain           21.7     0.0024   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01462.9.ls   1/1      52    79 ..     1    34 []    21.7   0.0024
PF00560.23.ls   2/6     105   127 ..     1    24 []     9.1      5.2
PF00560.23.ls   3/6     129   151 ..     1    24 []    12.7      1.1
PF00560.23.ls   4/6     153   175 ..     1    24 []    10.3      3.2
PF00560.23.ls   5/6     177   199 ..     1    24 []     8.9      5.7
PF00560.23.ls   6/6     203   225 ..     1    24 []    12.0      1.5

Alignments of top-scoring domains:
PF01462.9.ls: domain 1 of 1, from 52 to 79: score 21.7, E = 0.0024
                   *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-*
                       Cp  C C      +    C+g+gL+  vP +lP   
    KIAA1851    52    NCPYKCICA-----ADLLSCTGLGLQ-DVPAELP    79   

PF00560.23.ls: domain 2 of 6, from 105 to 127: score 9.1, E = 5.2
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L+ L+L++ N  l + l  + + n    
    KIAA1851   105    QLRALHLDH-N-EL-DALGRGvFvNA    127  

PF00560.23.ls: domain 3 of 6, from 129 to 151: score 12.7, E = 1.1
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L+ LdLs+ N  l + l  ++l++l   
    KIAA1851   129    GLRLLDLSS-N-TL-RALGRHdLdGL    151  

PF00560.23.ls: domain 4 of 6, from 153 to 175: score 10.3, E = 3.2
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       Le+L L + N +l+ +l+++++++l   
    KIAA1851   153    ALEKLLLFN-N-RLV-HLDEHaFhGL    175  

PF00560.23.ls: domain 5 of 6, from 177 to 199: score 8.9, E = 5.7
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L +L+L++ N  l  s++ ++l++l   
    KIAA1851   177    ALSHLYLGC-N-ELA-SFSFDhLhGL    199  

PF00560.23.ls: domain 6 of 6, from 203 to 225: score 12.0, E = 1.5
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L +LdLs+ N +l g++++  l  l   
    KIAA1851   203    HLLTLDLSS-N-RL-GHISVPeLaAL    225  

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