hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14473268/chunk_1/iprscan-20080502-14473268.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1858
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         106.2    9.2e-29   7
PF00096.16.fs Zinc finger, C2H2 type                          95.4    1.6e-25   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   2/7    1631  1653 ..     1    24 []    22.2   0.0017
PF00096.16.ls   5/7    1853  1875 ..     1    24 []    18.5    0.023
PF00096.16.fs   7/7    1934  1956 ..     1    24 []    23.2  0.00016
PF00096.16.ls   7/7    1934  1956 ..     1    24 []    25.1  0.00023

Alignments of top-scoring domains:
PF00096.16.ls: domain 2 of 7, from 1631 to 1653: score 22.2, E = 0.0017
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C ++F++ ++L  H+  H   
    KIAA1858  1631    YKCK-VCFQRFRSLGELDLHKLAH    1653 

PF00096.16.ls: domain 5 of 7, from 1853 to 1875: score 18.5, E = 0.023
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C+ +Cgk+F  +  L+rHl +H   
    KIAA1858  1853    RDCH-HCGKRFPKPFKLQRHLAVH    1875 

PF00096.16.fs: domain 7 of 7, from 1934 to 1956: score 23.2, E = 0.00016
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  C+++F  k+++ rH+++H   
    KIAA1858  1934    FACS-SCNYTFAKKEQFDRHMNKH    1956 

PF00096.16.ls: domain 7 of 7, from 1934 to 1956: score 25.1, E = 0.00023
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  C+++F  k+++ rH+++H   
    KIAA1858  1934    FACS-SCNYTFAKKEQFDRHMNKH    1956 

//