hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14473268/chunk_1/iprscan-20080502-14473268.nocrc
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Query sequence: KIAA1858
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
SM00355                                                 130.9    1.4e-34   7

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
SM00355        1/7     988  1011 ..     1    23 []    19.6     0.44
SM00355        2/7    1631  1653 ..     1    23 []    22.3    0.066
SM00355        3/7    1659  1683 ..     1    23 []     8.3       37
SM00355        4/7    1691  1713 ..     1    23 []    13.7      9.1
SM00355        5/7    1853  1875 ..     1    23 []    22.4    0.065
SM00355        6/7    1881  1904 ..     1    23 []    18.5     0.92
SM00355        7/7    1934  1956 ..     1    23 []    26.1   0.0048

Alignments of top-scoring domains:
SM00355: domain 1 of 7, from 988 to 1011: score 19.6, E = 0.44
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C++ C  sf+s + L rH  ++H   
    KIAA1858   988    VTCEV-CAASFRSGpGLSRHKArKH    1011 

SM00355: domain 2 of 7, from 1631 to 1653: score 22.3, E = 0.066
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C ++f+s ++L  H   H   
    KIAA1858  1631    YKCKV-CFQRFRSLgELDLHKLAH    1653 

SM00355: domain 3 of 7, from 1659 to 1683: score 8.3, E = 37
                   *->ykCpigCg.ksfssk.aLkrHmr.vH<-*
                       +C + C +++f s++ L+ H++++H   
    KIAA1858  1659    PTCYM-CVeRRFGSReLLRGHLQeRH    1683 

SM00355: domain 4 of 7, from 1691 to 1713: score 13.7, E = 9.1
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + C k   +   +++H+r H   
    KIAA1858  1691    WACGM-CLKEVADVwMYNEHLREH    1713 

SM00355: domain 5 of 7, from 1853 to 1875: score 22.4, E = 0.065
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ Cgk+f+ +  L+rH+ vH   
    KIAA1858  1853    RDCHH-CGKRFPKPfKLQRHLAVH    1875 

SM00355: domain 6 of 7, from 1881 to 1904: score 18.5, E = 0.92
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y Cp  C+++++ +++L  H+ + H   
    KIAA1858  1881    YLCPR-CPRVYPEHgELLAHLGgAH    1904 

SM00355: domain 7 of 7, from 1934 to 1956: score 26.1, E = 0.0048
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+  C+++f  k+++ rHm +H   
    KIAA1858  1934    FACSS-CNYTFAKKeQFDRHMNKH    1956 

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