hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15011488/chunk_1/iprscan-20080502-15011488.nocrc
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Query sequence: KIAA1866
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00041.11.fs Fibronectin type III domain                    123.8    6.7e-35   5
PF00041.11.ls Fibronectin type III domain                    124.9      2e-34   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00041.11.ls   1/4       1    81 [.     1    84 []    20.2   0.0014
PF00041.11.fs   1/5      13    81 ..    17    84 .]    24.3  2.5e-06
PF00041.11.ls   2/4     116   199 ..     1    84 []    27.8  3.6e-05
PF00041.11.fs   2/5     116   199 ..     1    84 []    25.8  8.9e-07
PF00041.11.fs   3/5     218   305 ..     1    84 []    33.7  4.8e-09
PF00041.11.ls   3/4     218   305 ..     1    84 []    35.7  1.5e-07
PF00041.11.ls   4/4    1544  1631 ..     1    84 []    41.3    3e-09
PF00041.11.fs   5/5    1544  1631 ..     1    84 []    39.3  1.2e-10

Alignments of top-scoring domains:
PF00041.11.ls: domain 1 of 4, from 1 to 81: score 20.2, E = 0.0014
                   *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge
                         P+ ++  + t   l ++W+pP++  ++p+++Y++ y  ++ ++ 
    KIAA1866     1    ---PRHVKLLS-TKMGLKVTWDPPKdaTSRPVEHYNIAY-GKSLKS- 41   

                   wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-*
                    k + v   t+s+ +++ +Pg+ Y v ++A n  G +++    
    KIAA1866    42 LKYIKVNAETYSFLIEDVEPGVVYFVLLTAENHSGvSRPV    81   

PF00041.11.fs: domain 1 of 5, from 13 to 81: score 24.3, E = 2.5e-06
                   *->ltlsWspPt..gngpitgYevtyRqpknggewkeltvpgtttsytlt
                      l ++W+pP++  ++p+++Y++ y  ++ ++  k + v   t+s+ ++
    KIAA1866    13    LKVTWDPPKdaTSRPVEHYNIAY-GKSLKS-LKYIKVNAETYSFLIE 57   

                   gLkPgteYtvrVqAvnggG.GpeS<-*
                   + +Pg+ Y v ++A n  G +++    
    KIAA1866    58 DVEPGVVYFVLLTAENHSGvSRPV    81   

PF00041.11.ls: domain 2 of 4, from 116 to 199: score 27.8, E = 3.6e-05
                   *->PsaPtnltvtdvtstsltlsWspPt.....gngpitgYevtyRqpkn
                      P +P +++v++ +++ l++ W++P+ ++ +  +   g+ + y  +++
    KIAA1866   116    PNKPLRVRVRS-SDDRLSVAWKAPRlsgakSPRRSRGFLLGY-GESG 160  

                   ggewkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-*
                       + + +++++++++++ L   + Y+v++q+ n +  ++S   
    KIAA1866   161 RK-MNYVPLTRDERTHEIKKLASESVYVVSLQSMNSQ--GRS    199  

PF00041.11.fs: domain 2 of 5, from 116 to 199: score 25.8, E = 8.9e-07
                   *->PsaPtnltvtdvtstsltlsWspPt.....gngpitgYevtyRqpkn
                      P +P +++v++ +++ l++ W++P+ ++ +  +   g+ + y  +++
    KIAA1866   116    PNKPLRVRVRS-SDDRLSVAWKAPRlsgakSPRRSRGFLLGY-GESG 160  

                   ggewkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-*
                       + + +++++++++++ L   + Y+v++q+ n +  ++S   
    KIAA1866   161 RK-MNYVPLTRDERTHEIKKLASESVYVVSLQSMNSQ--GRS    199  

PF00041.11.fs: domain 3 of 5, from 218 to 305: score 33.7, E = 4.8e-09
                   *->PsaPtnltvtdvtstsltlsWspPt.....gngpitgYevtyRqpkn
                      ++ P +++v+  +s s+ +sW  P  ++++       Y+v+yR +k+
    KIAA1866   218    LDVPDDISVRVMSSQSVLVSWVDPVlekqkKVVASRQYTVRYR-EKG 263  

                   gge.wkeltvpgtttsytltgLkPgteYtvrVqAvnggG..GpeS<-*
                   +  +w  +++ +    + +++L P+t Y++ V+ +++g ++G++S   
    KIAA1866   264 ELArWDYKQIANRR--VLIENLIPDTVYEFAVR-ISQGErdGKWS    305  

PF00041.11.ls: domain 3 of 4, from 218 to 305: score 35.7, E = 1.5e-07
                   *->PsaPtnltvtdvtstsltlsWspPt.....gngpitgYevtyRqpkn
                      ++ P +++v+  +s s+ +sW  P  ++++       Y+v+yR +k+
    KIAA1866   218    LDVPDDISVRVMSSQSVLVSWVDPVlekqkKVVASRQYTVRYR-EKG 263  

                   gge.wkeltvpgtttsytltgLkPgteYtvrVqAvnggG..GpeS<-*
                   +  +w  +++ +    + +++L P+t Y++ V+ +++g ++G++S   
    KIAA1866   264 ELArWDYKQIANRR--VLIENLIPDTVYEFAVR-ISQGErdGKWS    305  

PF00041.11.ls: domain 4 of 4, from 1544 to 1631: score 41.3, E = 3e-09
                   *->P.saPtnltvtdv..tstsltlsWspPtgngpitgYevtyRqpkngg
                      P+ aP+n+tv +v++  + + + W+++t++ ++tgY v y + +  +
    KIAA1866  1544    PqHAPRNITVVAVegCHSFVIVDWDKATPGDVVTGYLV-Y-SAS-YE 1587 

                   e....wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-*
                   +  +++ + + +++t +  +++LkP+t+Y ++VqA+n +G Gp S   
    KIAA1866  1588 DfirnKWSTQASSVT-HLPIENLKPNTRYYFKVQAQNPHGyGPIS    1631 

PF00041.11.fs: domain 5 of 5, from 1544 to 1631: score 39.3, E = 1.2e-10
                   *->P.saPtnltvtdv..tstsltlsWspPtgngpitgYevtyRqpkngg
                      P+ aP+n+tv +v++  + + + W+++t++ ++tgY v y + +  +
    KIAA1866  1544    PqHAPRNITVVAVegCHSFVIVDWDKATPGDVVTGYLV-Y-SAS-YE 1587 

                   e....wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-*
                   +  +++ + + +++t +  +++LkP+t+Y ++VqA+n +G Gp S   
    KIAA1866  1588 DfirnKWSTQASSVT-HLPIENLKPNTRYYFKVQAQNPHGyGPIS    1631 

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