hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15030250/chunk_1/iprscan-20080502-15030250.nocrc
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Query sequence: KIAA1867
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00409                                                 145.0    7.7e-39   4
SM00408                                                  73.8    2.1e-17   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/4      55   145 ..     1    58 []    47.7  1.6e-09
SM00408    1/3      61   135 ..     1    56 []    12.7     0.26
SM00409    2/4     156   248 ..     1    58 []    20.2     0.29
SM00408    2/3     162   235 ..     1    56 []    11.8     0.33
SM00409    3/4     342   418 ..     1    58 []    52.5  5.4e-11
SM00408    3/3     348   406 ..     1    56 []    49.4  4.8e-10
SM00409    4/4     426   518 ..     1    58 []    24.7    0.013

Alignments of top-scoring domains:
SM00409: domain 1 of 4, from 55 to 145: score 47.7, E = 1.6e-09
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                      p++++v+ G++vtL C ++  ++ + W +++   + +++ ++ ++  
    KIAA1867    55    PQdQVVVSGQPVTLLCaIPeydgFVLWIkdglalgvgrdlssypqyl 101  

                   ...........LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<
                     +++ ++ ++L I +++++D    ++Y C+a  +   s   +++LtVl 
    KIAA1867   102 vvgnhlsgehhLKIlRAELQDD---AVYECQAIqAAIRSR--PARLTVL  145  

                   -*
                     
    KIAA1867     -    -    

SM00408: domain 1 of 3, from 61 to 135: score 12.7, E = 0.26
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.................
                       +Gq+VtL C      +  + W+k+g  l  +++ ++ ++    +++
    KIAA1867    61    VSGQPVTLLCA-IPEYDGFVLWIKdGLALGvgrdlssypqylvvgnh 106  

                   ..sgstLtiknvsleDsGlYtCvArNsvg<-*
                    +++ +L+i +++l D+ +Y+C+A  ++    
    KIAA1867   107 lsGEHHLKILRAELQDDAVYECQAIQAAI    135  

SM00409: domain 2 of 4, from 156 to 248: score 20.2, E = 0.29
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                       p ++ ++G++++LtC+a + ++  +i W++++   ++ + +++  +
    KIAA1867   156    GPvISLRAGDPLNLTChADnakpaaSIIWLrkgevingatysktllr 202  

                   ..........LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtV
                   ++++ +  ++L I++  +e+       +C+at++   g ++   ++t+ +
    KIAA1867   203 dgkresivstLFIsPGDVENG---QSIVCRATnkaiPGGKET--SVTIDI 247  

                   l<-*
                   +   
    KIAA1867   248 Q    248  

SM00408: domain 2 of 3, from 162 to 235: score 11.8, E = 0.33
                   *->leGqsVtLtCp.asgdpvpnItWlk.gkplp................
                      + G+++ LtC+  +++p+++I Wl++g+ +++ + +++  +++++++
    KIAA1867   162    RAGDPLNLTCHaDNAKPAASIIWLRkGEVINgatysktllrdgkres 208  

                   sgstLtiknvsleDsGlYtCvArNsvg<-*
                     stL i++  +e     +C+A+N++    
    KIAA1867   209 IVSTLFISPGDVENGQSIVCRATNKAI    235  

SM00409: domain 3 of 4, from 342 to 418: score 52.5, E = 5.4e-11
                   *->pp.vtvkeGesvtLtC.as.....titWy.............LtI.n
                      p++++v +G+++ ++C  +++++ ti W++++++   ++ ++Lt+++
    KIAA1867   342    PQsLLVDLGSDAIFSCaWTgnpslTIVWMkrgsgvvlsnektLTLkS 388  

                   vtpeDsesgGtYtCaat...sgsasseqgttLtVl<-*
                   v+ eD+   G Y+C+a  ++ g ++   ++tLtV    
    KIAA1867   389 VRQEDA---GKYVCRAVvprVGAGER--EVTLTVN    418  

SM00408: domain 3 of 3, from 348 to 406: score 49.4, E = 4.8e-10
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp..sgstLtiknvsleDs
                        G ++++ C ++g+p  +I W k+g+ +  ++++tLt+k+v+ eD+
    KIAA1867   348    DLGSDAIFSCAWTGNPSLTIVWMKrGSGVVlsNEKTLTLKSVRQEDA 394  

                   GlYtCvArNsvg<-*
                   G+Y+C+A  +     
    KIAA1867   395 GKYVCRAVVPRV    406  

SM00409: domain 4 of 4, from 426 to 518: score 24.7, E = 0.013
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                       +++ +  Ge  +++C + +++++++i W+ + +   ++++++ +  
    KIAA1867   426    TQtQHALHGEKGQIKCfIRstpppdRIAWSwkenvlesgtsgrytve 472  

                   ...........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl
                   + ++  +  ++LtI+n+ ++D +   +Y C+a+++ gs++    ++L+ +
    KIAA1867   473 tisteegvistLTIsNIVRADFQ--TIYNCTAWnsFGSDTE--IIRLKEQ 518  

                   <-*
                      
    KIAA1867     -     -    

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