hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15061739/chunk_1/iprscan-20080502-15061739.nocrc
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Query sequence: KIAA1869
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01403.10.ls Sema domain                                    473.7   2.2e-139   1
PF01403.10.fs Sema domain                                    471.7   8.4e-139   1
PF01437.15.fs Plexin repeat                                   21.6    1.8e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01403.10.fs   1/1      69   496 ..     1   490 []   471.7 8.4e-139
PF01403.10.ls   1/1      69   496 ..     1   490 []   473.7 2.2e-139
PF01437.15.fs   1/1     523   544 ..     1    22 [.    21.6  1.8e-06

Alignments of top-scoring domains:
PF01403.10.fs: domain 1 of 1, from 69 to 496: score 471.7, E = 8.4e-139
                   *->frtllldedrgrLyVGArNhvyvLnledls....erlqqkigWpssp
                       r+l+l++    L+V+Ar+hv++++l+   ++++++ ++ ++W s  
    KIAA1869    69    QRFLTLNRT---LLVAARDHVFSFDLQAEEegegLVPNKYLTWRSQ- 111  

                   geekceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCt
                      ++e C+ +Gk+     +eC N+irVL+p+++  L++CGTn+F+PvC+
    KIAA1869   112 ---DVENCAVRGKL----TDECYNYIRVLVPWDSQTLLACGTNSFSPVCR 154  

                   linlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgr
                    + +++             + + +++e sG++rCP+d++++++++++   
    KIAA1869   155 SYGITS-------------LQQ-EGEELSGQARCPFDATQSNVAIFA-E- 188  

                   tgeLYsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnF
                    g LYs+t+aD      F  +d++++Rslg ++plr  ++dskwl eP+F
    KIAA1869   189 -GSLYSATAAD------FQASDAVVYRSLGPQPPLRSAKYDSKWLREPHF 231  

                   VdsypipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGG
                   V++   +       d+VYFFFrE +ve++   g++ +sRVaRvCk D+GG
    KIAA1869   232 VQALEHG-------DHVYFFFREVSVEDA-RLGRVQFSRVARVCKRDMGG 273  

                   .rrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAr
                   ++r l    WT+FLK RLnCSvpG  +   fyF++LQa            
    KIAA1869   274 sPRALD-RHWTSFLKLRLNCSVPG--DST-FYFDVLQALTGPVNLHG--- 316  

                   eLgIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkh
                         r   ++GVFtt+ nsi+g    SAVCaF +  I++ F +G+fk+
    KIAA1869   317 ------RS-ALFGVFTTQTNSIPG----SAVCAFYLDEIERGF-EGKFKE 354  

                   qssEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfik
                   q s   + +w+p+   +vP+PRPG+C++  + ++++S++dlPDd+l+fik
    KIAA1869   355 QRS--LDGAWTPVSEDRVPSPRPGSCAGVGGAALFSSSRDLPDDVLTFIK 402  

                   shpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlG
                    hpL+d +vpP++ +Pl++ ts   +lTq+aVd   +ag   + tV+FlG
    KIAA1869   403 AHPLLDPAVPPVTHQPLLTLTSR-ALLTQVAVD--GMAGPHSNITVMFLG 449  

                   TddGtvlKkvvvlsrssssyeevvleelqvfkdpriePvqnleisskq<-
                    +dGtvlK ++   rs++ +e  +lee+  +++ r+++ ++ ++++    
    KIAA1869   450 SNDGTVLKVLTPGGRSGG-PEPILLEEIDAYSPARCSGKRTAQTARRI   496  

                   *
                    
    KIAA1869     -   -    

PF01403.10.ls: domain 1 of 1, from 69 to 496: score 473.7, E = 2.2e-139
                   *->frtllldedrgrLyVGArNhvyvLnledls....erlqqkigWpssp
                       r+l+l++    L+V+Ar+hv++++l+   ++++++ ++ ++W s  
    KIAA1869    69    QRFLTLNRT---LLVAARDHVFSFDLQAEEegegLVPNKYLTWRSQ- 111  

                   geekceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCt
                      ++e C+ +Gk+     +eC N+irVL+p+++  L++CGTn+F+PvC+
    KIAA1869   112 ---DVENCAVRGKL----TDECYNYIRVLVPWDSQTLLACGTNSFSPVCR 154  

                   linlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgr
                    + +++             + + +++e sG++rCP+d++++++++++   
    KIAA1869   155 SYGITS-------------LQQ-EGEELSGQARCPFDATQSNVAIFA-E- 188  

                   tgeLYsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnF
                    g LYs+t+aD      F  +d++++Rslg ++plr  ++dskwl eP+F
    KIAA1869   189 -GSLYSATAAD------FQASDAVVYRSLGPQPPLRSAKYDSKWLREPHF 231  

                   VdsypipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGG
                   V++   +       d+VYFFFrE +ve++   g++ +sRVaRvCk D+GG
    KIAA1869   232 VQALEHG-------DHVYFFFREVSVEDA-RLGRVQFSRVARVCKRDMGG 273  

                   .rrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAr
                   ++r l    WT+FLK RLnCSvpG  +   fyF++LQa            
    KIAA1869   274 sPRALD-RHWTSFLKLRLNCSVPG--DST-FYFDVLQALTGPVNLHG--- 316  

                   eLgIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkh
                         r   ++GVFtt+ nsi+g    SAVCaF +  I++ F +G+fk+
    KIAA1869   317 ------RS-ALFGVFTTQTNSIPG----SAVCAFYLDEIERGF-EGKFKE 354  

                   qssEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfik
                   q s   + +w+p+   +vP+PRPG+C++  + ++++S++dlPDd+l+fik
    KIAA1869   355 QRS--LDGAWTPVSEDRVPSPRPGSCAGVGGAALFSSSRDLPDDVLTFIK 402  

                   shpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlG
                    hpL+d +vpP++ +Pl++ ts   +lTq+aVd   +ag   + tV+FlG
    KIAA1869   403 AHPLLDPAVPPVTHQPLLTLTSR-ALLTQVAVD--GMAGPHSNITVMFLG 449  

                   TddGtvlKkvvvlsrssssyeevvleelqvfkdpriePvqnleisskq<-
                    +dGtvlK ++   rs++ +e  +lee+  +++ r+++ ++ ++++    
    KIAA1869   450 SNDGTVLKVLTPGGRSGG-PEPILLEEIDAYSPARCSGKRTAQTARRI   496  

                   *
                    
    KIAA1869     -   -    

PF01437.15.fs: domain 1 of 1, from 523 to 544: score 21.6, E = 1.8e-06
                   *->nCsqytsC.ssCLaardpfyCgW<-*
                      +C++++ C+ sCLa++dp yCgW   
    KIAA1869   523    RCARHGACqRSCLASQDP-YCGW    544  

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