# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh05136b.fasta.huge -Q ../query/KIAA1870.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1870, 832 aa vs ./tmplib.25089 library 1986673 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 11.2998+/-0.0127; mu= -12.9280+/- 0.859 mean_var=644.3788+/-153.515, 0's: 0 Z-trim: 14 B-trim: 0 in 0/40 Lambda= 0.050525 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1510 ( 1140 res) fg02934(revised) (1140) 480 50.8 9.7e-07 KIAA0824 ( 1644 res) hh02773 (1644) 481 51.1 1.1e-06 KIAA1983 ( 418 res) fk09737(revised) ( 418) 294 36.6 0.0066 >>KIAA1510 ( 1140 res) fg02934(revised) (1140 aa) initn: 428 init1: 428 opt: 480 Z-score: 212.9 bits: 50.8 E(): 9.7e-07 Smith-Waterman score: 516; 40.586% identity (56.485% similar) in 239 aa overlap (12-248:920-1132) 10 20 30 40 KIAA18 GGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRG ::: :::::::: : : : .: :::: KIAA15 ADEDRCCELPASRDGETCPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRG 890 900 910 920 930 940 50 60 70 80 90 100 KIAA18 PDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPG : : ::.:..:: :: ::. ::.::. :. : : .:. :. : : :::: KIAA15 PPGVKGEKGDHGL---PGLQGH---PGHQGIPGRVGLQGPKGMRGLEG------TAGLPG 950 960 970 980 990 110 120 130 140 150 160 KIAA18 EPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLG-PLGTPGEQGLIGQRGEP :::.: :: : : : .::::.:: :::: : .:. : : . :..: : KIAA15 PPGPRGFQGMAGARGTSGERGPPGTVGPTGLPGPKGERGEKGEPQSLATLYQLVSQACES 1000 1010 1020 1030 1040 1050 170 180 190 200 210 KIAA18 GLEGDSGPMGPDGLKGDRGDPGPDGEHG-EKGQEGLMGEDGPPGPPGVTGVRGPEGKSGK ... . . :... . : : :. : : : : : :: . . : : :..:. KIAA15 AIQTHVSKF--DSFHENTRPPMPILEQKLEPGTEPL----GSPGTRSKALVPGEWGRGGR 1060 1070 1080 1090 1100 1110 220 230 240 250 260 270 KIAA18 QGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGL . : :: : : .:.:: ::. : KIAA15 HLE-GR-------GEPGAVGQMGSPGQQGASTQGLWE 1120 1130 1140 >>KIAA0824 ( 1644 res) hh02773 (1644 aa) initn: 207 init1: 111 opt: 481 Z-score: 211.6 bits: 51.1 E(): 1.1e-06 Smith-Waterman score: 493; 33.215% identity (51.332% similar) in 563 aa overlap (13-534:839-1342) 10 20 30 KIAA18 GGHPGMPGGMGTPGEPGPQGPPGSR-GPPGM--RGAKGRRGP : ::. : .: :: : .: . . .: KIAA08 DSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIFEGPN-KLSP 810 820 830 840 850 860 40 50 60 70 80 90 KIAA18 RGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFP-GIPGPSGPPGTKG : ::: . : . : :: .: : : . : .:.::. : : . :: :: :: KIAA08 R-IDGPPTPASLR-FDGSPGQMG-GGGPLR--FEGPQGQLGG-GCPLRFEGPPGPVGT-- 870 880 890 900 910 100 110 120 130 140 150 KIAA18 LPGEPGPQGPQGPIGPPGEMGPK--GPPGAVGEPGLPGEAGMKGDLGPLGTP-GEQGLIG : .:::: : : . : :: : : :: :.. . :: : : : . : KIAA08 ------PLRFEGPIGQAGGGGFRFEGSPGLRFE-GSPG--GLRFE-GPGGQPVGGLRFEG 920 930 940 950 960 160 170 180 190 200 KIAA18 QRGEP--GL--EGDSG-PMGPDGLKGD--RGDP-GP---DGEHGEKGQEGLMGEDGPPGP .::.: :: :: : :.: ::. : ::.: : .: :: .: . . ::: : KIAA08 HRGQPVGGLRFEGPHGQPVG--GLRFDNPRGQPVGGLRFEGGHGPSG--AAIRFDGPHGQ 970 980 990 1000 1010 1020 210 220 230 240 250 KIAA18 PGVTGVR--GPEGKSGK----QGEKGRTGAKGAKGYQGQLGEMGVPGD---PGPPGTPGP :: :.: :: ..: .: .:.. : : . ..:: ...: :. :: : :: KIAA08 PG-GGIRFEGPLLQQGVGMRFEGPHGQSVA-GLR-FEGQHNQLG--GNLRFEGPHGQPGV 1030 1040 1050 1060 1070 1080 260 270 280 290 300 310 KIAA18 KGSR--GSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGP : : : : : : : .: :.. : : : :::: ::. : : .. . .: KIAA08 -GIRFEGPLVQQG--GGMRFEG-PSVPG--GGLRIEGPLGQGGPRFE-GCHAL--RFDGQ 1090 1100 1110 1120 1130 320 330 340 350 360 KIAA18 PGPPGDRGPVGDRGDRGEPGDPGY---PGQEGVQGLRGKPGQQGQPGHPG-PRGWPGPKG :: :. : : : .:.:: : . ::: : : . : :::: :: : :. . ::. KIAA08 PGQPS-LLPRFD-GLHGQPG-PRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQH 1140 1150 1160 1170 1180 370 380 390 400 410 420 KIAA18 SKGA--EGPKGKQGKA--GAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQA .... . : : :: . :..: . . :: . : ... .:. .: KIAA08 QQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYN--DPPG-NAFNAPS-----QGLQ 1190 1200 1210 1220 1230 1240 430 440 450 460 470 480 KIAA18 GQQGEQGDDGDPGPM--GPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEG :. :: :. :: :: : :: . .. : .. . :..: .. . :. : KIAA08 FQRHEQIFDSPQGPNFNGPHGP-GNQSFSN-PLNRASGHYFDEKNLQSS-----QFGNFG 1250 1260 1270 1280 1290 490 500 510 520 530 540 KIAA18 RTGLPGNQGEPGSKGQ--PGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGK : . :. .. : : . ..: :.. : : : . :: .:.: : KIAA08 NIPAPMTVGNIQASQQVLSGVAQPVAF-GQGQQFLPVHPQNP-GF--VQNPSGALPKAYP 1300 1310 1320 1330 1340 550 560 570 580 590 600 KIAA18 EGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQDDL KIAA08 DNHLSQVDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTN 1350 1360 1370 1380 1390 1400 >>KIAA1983 ( 418 res) fk09737(revised) (418 aa) initn: 349 init1: 195 opt: 294 Z-score: 144.0 bits: 36.6 E(): 0.0066 Smith-Waterman score: 324; 52.222% identity (64.444% similar) in 90 aa overlap (2-89:259-345) 10 20 30 KIAA18 GGHPGMPGGMGTPGEPGPQGPPGSRGPPGMR : ::.:::.: :: :::.: :: : :: KIAA19 QKIALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPP 230 240 250 260 270 280 40 50 60 70 80 KIAA18 GAKGRRGPRGPDGPAGEQG--SRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPG : : :: :: ::. . . ..: .:: :: :: ::..: :::: : :: :: :: KIAA19 GQPGPRGSMGPMGPSPDLSHIKQGRRGPVGP---PGAPGRDGSKGERGAPGPRGSPGPPG 290 300 310 320 330 340 90 100 110 120 130 140 KIAA18 PSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPG KIAA19 SFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRT 350 360 370 380 390 400 832 residues in 1 query sequences 1986673 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:11 2008 done: Thu Dec 18 15:20:11 2008 Total Scan time: 0.600 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]