hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15075463/chunk_1/iprscan-20080502-15075463.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1870 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01391.8.ls Collagen triple helix repeat (20 copies) 454.2 1.6e-133 9 PF01391.8.fs Collagen triple helix repeat (20 copies) 443.5 2.7e-130 11 PF01410.8.fs Fibrillar collagen C-terminal domain 149.4 9.8e-61 2 PF01410.8.ls Fibrillar collagen C-terminal domain 131.4 2.3e-36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01391.8.fs 1/11 2 58 .. 4 60 .] 37.6 2.7e-09 PF01391.8.ls 1/9 5 64 .. 1 60 [] 46.8 6.8e-11 PF01391.8.fs 2/11 59 118 .. 1 60 [] 56.4 2.7e-14 PF01391.8.ls 2/9 65 124 .. 1 60 [] 50.1 7.1e-12 PF01391.8.ls 3/9 125 184 .. 1 60 [] 52.1 1.7e-12 PF01391.8.fs 4/11 131 190 .. 1 60 [] 51.9 4.4e-13 PF01391.8.ls 4/9 188 247 .. 1 60 [] 48.8 1.7e-11 PF01391.8.fs 5/11 191 250 .. 1 60 [] 40.6 4.3e-10 PF01391.8.ls 5/9 251 310 .. 1 60 [] 53.8 5.2e-13 PF01391.8.fs 6/11 251 310 .. 1 60 [] 51.8 4.5e-13 PF01391.8.fs 7/11 312 359 .. 1 48 [. 40.4 5.1e-10 PF01391.8.ls 6/9 312 371 .. 1 60 [] 58.4 2.1e-14 PF01391.8.fs 8/11 360 415 .. 1 56 [. 40.5 4.7e-10 PF01391.8.ls 7/9 384 443 .. 1 60 [] 48.5 2e-11 PF01391.8.fs 9/11 417 471 .. 1 55 [. 40.4 4.9e-10 PF01391.8.ls 8/9 450 509 .. 1 60 [] 50.8 4.3e-12 PF01391.8.fs 10/11 474 533 .. 1 60 [] 38.9 1.3e-09 PF01391.8.fs 11/11 534 593 .. 1 60 [] 42.8 1.1e-10 PF01391.8.ls 9/9 534 593 .. 1 60 [] 44.8 2.7e-10 PF01410.8.ls 1/1 648 831 .. 1 226 [] 131.4 2.3e-36 PF01410.8.fs 1/2 648 706 .. 1 63 [. 92.7 7.8e-38 PF01410.8.fs 2/2 715 831 .. 108 226 .] 56.8 2.4e-23 Alignments of top-scoring domains: PF01391.8.fs: domain 1 of 11, from 2 to 58: score 37.6, E = 2.7e-09 *->GppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGppGp G pG pG G pG+pGp+Gp+G++GppG +G++G+ Gp+Gp+Gp+G+ KIAA1870 2 GHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGE 48 pGapGapGpp<-* +G G +Gpp KIAA1870 49 QGSRGLKGPP 58 PF01391.8.ls: domain 1 of 9, from 5 to 64: score 46.8, E = 6.8e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG +G pG+pGp GppG Gp+G +G +G +G++Gp+Gp+G+ G+ KIAA1870 5 GMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGS 51 pGppGapGapGpp<-* +G +G+pG+ G p KIAA1870 52 RGLKGPPGPQGRP 64 PF01391.8.fs: domain 2 of 11, from 59 to 118: score 56.4, E = 2.7e-14 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp G+pG+pG +G +G++G+ G +G+pG pGp+G+pG G pG+pGp KIAA1870 59 GPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGP 105 pGppGapGapGpp<-* +Gp+G++G+pG+ KIAA1870 106 QGPQGPIGPPGEM 118 PF01391.8.ls: domain 2 of 9, from 65 to 124: score 50.1, E = 7.1e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+pG++G +G++G G +G+pG +G+ GppG +G pG+PGp+Gp Gp KIAA1870 65 GRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGP 111 pGppGapGapGpp<-* GppG+ G++Gpp KIAA1870 112 IGPPGEMGPKGPP 124 PF01391.8.ls: domain 3 of 9, from 125 to 184: score 52.1, E = 1.7e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+ G+pG pG++G++G+ Gp G +G++G G +GepG G Gp+Gp KIAA1870 125 GAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGP 171 pGppGapGapGpp<-* G +G G+pGp KIAA1870 172 DGLKGDRGDPGPD 184 PF01391.8.fs: domain 4 of 11, from 131 to 190: score 51.9, E = 4.4e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG++G +G+ Gp G pG++G G +G+pG G++Gp Gp+G G KIAA1870 131 GLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGD 177 pGppGapGapGpp<-* +G pG++G+ G+ KIAA1870 178 RGDPGPDGEHGEK 190 PF01391.8.ls: domain 4 of 9, from 188 to 247: score 48.8, E = 1.7e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G++G+ G G+ GppGppG +G +G+ G G +Ge+G+ G++G+ G KIAA1870 188 GEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGY 234 pGppGapGapGpp<-* +G+ G+ G pG p KIAA1870 235 QGQLGEMGVPGDP 247 PF01391.8.fs: domain 5 of 11, from 191 to 250: score 40.6, E = 4.3e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G G++G+ GppGppG G Gp G+ G +G +G G+ G++G G+ KIAA1870 191 GQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQ 237 pGppGapGapGpp<-* G+ G pG+pGpp KIAA1870 238 LGEMGVPGDPGPP 250 PF01391.8.ls: domain 5 of 9, from 251 to 310: score 53.8, E = 5.2e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pGp G++G Gp+G+pG G++G+pG +G G +G Gp GppGp KIAA1870 251 GTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGP 297 pGppGapGapGpp<-* +G++G+ G+ G++ KIAA1870 298 KGEKGEQGEDGKA 310 PF01391.8.fs: domain 6 of 11, from 251 to 310: score 51.8, E = 4.5e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pGp G++G Gp+G+pG G++G+pG +G G +G Gp GppGp KIAA1870 251 GTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGP 297 pGppGapGapGpp<-* +G++G+ G+ G++ KIAA1870 298 KGEKGEQGEDGKA 310 PF01391.8.fs: domain 7 of 11, from 312 to 359: score 40.4, E = 5.1e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppGppG +Gp G +G++G+pG++G pG G +G +G PG++G+pG KIAA1870 312 GPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGH 358 p<-* p KIAA1870 359 P 359 PF01391.8.ls: domain 6 of 9, from 312 to 371: score 58.4, E = 2.1e-14 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppGppG +Gp G +G++G+pG++G pG G +G +G PG++G+pG KIAA1870 312 GPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGH 358 pGppGapGapGpp<-* pGp+G pG++G KIAA1870 359 PGPRGWPGPKGSK 371 PF01391.8.fs: domain 8 of 11, from 360 to 415: score 40.5, E = 4.7e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp+G pGp+G G+ Gp+G +G aGapG +G +G G PGp+G+ G KIAA1870 360 GPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGR 406 pGppGapGa<-* +G +G +G+ KIAA1870 407 QGLEGIAGP 415 PF01391.8.ls: domain 7 of 9, from 384 to 443: score 48.5, E = 2e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+pG++G G++G pGp+G G +G G +Gp G pG++G++G+ G KIAA1870 384 GAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGE 430 pGppGapGapGpp<-* +G +G pG++Gp+ KIAA1870 431 QGDDGDPGPMGPA 443 PF01391.8.fs: domain 9 of 11, from 417 to 471: score 40.4, E = 4.9e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG+ G +G +G+ G+ G pGp G++G +G+pG +G PG++GppG+ KIAA1870 417 GLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGF 463 pGppGapG<-* +G+ G pG KIAA1870 464 KGESGLPG 471 PF01391.8.ls: domain 8 of 9, from 450 to 509: score 50.8, E = 4.3e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G+pG+ GppG +G++G pG+ G+pG +G G G PG +G+pG+ KIAA1870 450 GVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGS 496 pGppGapGapGpp<-* +G+pG +G++G p KIAA1870 497 KGQPGDSGEMGFP 509 PF01391.8.fs: domain 10 of 11, from 474 to 533: score 38.9, E = 1.3e-09 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppG++G G +G pG+ G+pG +G pG+ G G+pG G Gp Gp KIAA1870 474 GPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGP 520 pGppGapGapGpp<-* pG G +G Gp+ KIAA1870 521 PGDIGFKGIQGPR 533 PF01391.8.fs: domain 11 of 11, from 534 to 593: score 42.8, E = 1.1e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppG++G G Gp G Gp G +G++G++G +G+ G +Gp+GppGp KIAA1870 534 GPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGP 580 pGppGapGapGpp<-* +G pG+pG+pG p KIAA1870 581 RGRPGPPGPPGGP 593 PF01391.8.ls: domain 9 of 9, from 534 to 593: score 44.8, E = 2.7e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppG++G G Gp G Gp G +G++G++G +G+ G +Gp+GppGp KIAA1870 534 GPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGP 580 pGppGapGapGpp<-* +G pG+pG+pG p KIAA1870 581 RGRPGPPGPPGGP 593 PF01410.8.ls: domain 1 of 1, from 648 to 831: score 131.4, E = 2.3e-36 *->lksPeGksrknPARtCkDLfLchpefksGeYWiDPNqGCikDAikVf +k+P+G ++ nPAR C+DL c + +G+YW+DPN+GC+ D i+V KIAA1870 648 IKTPLG-TKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVS 693 CnkrfetGvgeTCisptpksvpkRiksWykgkskdkKhvWFgetmegGfk Cn f+ G g+TC p + + s k KIAA1870 694 CN--FTHG-GQTCLKP----ITA---------S----------------K 711 fsYiddelnpeisnvQlTFLRLLSteAsQNiTYhCKNSvAYmDeatGNl. +++ +is+vQ+ FL LLS+e Q iT hC N + e tG ++ KIAA1870 712 VEF-------AISRVQMNFLHLLSSEVTQHITIHCLN-MTVWQEGTGQTp 753 .kkAlilmgSnDvElsadgnskFtYtvlGeDGCssrtgewgKTViEyeTk k+A++++ n + a F+ +v DGC+ g w +T + ++T+ KIAA1870 754 aKQAVRFRAWNGQIFEAG--GQFRPEVS-MDGCKVQDGRWHQTLFTFRTQ 800 KttRLPIvDiApsDiGgedQeFGveiGPVCF<-* +++LPI+ + + ++ +e+GP+CF KIAA1870 801 DPQQLPIISVDNLPPASSGKQYRLEVGPACF 831 PF01410.8.fs: domain 1 of 2, from 648 to 706: score 92.7, E = 7.8e-38 *->lksPeGksrknPARtCkDLfLchpefksGeYWiDPNqGCikDAikVf +k+P+G ++ nPAR C+DL c + +G+YW+DPN+GC+ D i+V KIAA1870 648 IKTPLG-TKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVS 693 CnkrfetGvgeTCisp<-* Cn f+ G g+TC p KIAA1870 694 CN--FTHG-GQTCLKP 706 PF01410.8.fs: domain 2 of 2, from 715 to 831: score 56.8, E = 2.4e-23 *->eisnvQlTFLRLLSteAsQNiTYhCKNSvAYmDeatGNl..kkAlil +is+vQ+ FL LLS+e Q iT hC N + e tG ++ k+A+++ KIAA1870 715 AISRVQMNFLHLLSSEVTQHITIHCLN-MTVWQEGTGQTpaKQAVRF 760 mgSnDvElsadgnskFtYtvlGeDGCssrtgewgKTViEyeTkKttRLPI + n + a F+ +v DGC+ g w +T + ++T+ +++LPI KIAA1870 761 RAWNGQIFEAG--GQFRPEVS-MDGCKVQDGRWHQTLFTFRTQDPQQLPI 807 vDiApsDiGgedQeFGveiGPVCF<-* + + + ++ +e+GP+CF KIAA1870 808 ISVDNLPPASSGKQYRLEVGPACF 831 //