hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15075463/chunk_1/iprscan-20080502-15075463.nocrc
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Query sequence: KIAA1870
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00038                                                 157.0    1.9e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00038    1/1     631   832 .]     1   240 []   157.0  1.9e-42

Alignments of top-scoring domains:
SM00038: domain 1 of 1, from 631 to 832: score 157.0, E = 1.9e-42
                   *->deeifasLkslnnLHKqIEqlksPtGskdnPARtCkDLkLcHpelkd
                        eif +L  l+n    I+++k+P+G+k nPAR C+DL  c +   d
    KIAA1870   631    GGEIFKTLHYLSN---LIQSIKTPLGTKENPARVCRDLMDCEQKMVD 674  

                   GeYWvDPNqGCirDAikVfCnfetGvgeTCvspspssiprktWysgkskd
                   G+YWvDPN+GC+ D i+V Cnf+ G g+TC +p                 
    KIAA1870   675 GTYWVDPNLGCSSDTIEVSCNFTHG-GQTCLKP----------------- 706  

                   kkhvWFgetmngGfkFsYgdsegspvgvvQLTFLRLLSteAsQniTYhCK
                            +   +k++  +s+      vQ++FL LLS+e +Q iT hC 
    KIAA1870   707 ---------IT-ASKVEFAISR------VQMNFLHLLSSEVTQHITIHCL 740  

                   NSvAYmDeatGNl..kkAlilrgsnDvElsaegnskftYeVLe.DGCqkr
                   N   +  e tG ++ k+A+++r  n     a g +++ +     DGC+ +
    KIAA1870   741 NM-TVWQEGTGQTpaKQAVRFRAWNGQIFEAGGQFRPEV---SmDGCKVQ 786  

                   tgkwgKTViEyrTkkteRLPIvDiAPsDIGGadQeFGveiGPVCFs<-*
                    g w +T + +rT+ + +LPI+ +  +  +       +e+GP+CF+   
    KIAA1870   787 DGRWHQTLFTFRTQDPQQLPIISVDNLPPASSGKQYRLEVGPACFL    832  

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