hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15144415/chunk_1/iprscan-20080502-15144415.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1874 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 291.9 4.6e-83 10 SM00349 89.9 3.1e-22 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 103 158 .. 1 62 [] 89.9 3.1e-22 SM00355 1/10 301 323 .. 1 23 [] 23.8 0.025 SM00355 2/10 329 351 .. 1 23 [] 33.1 3.8e-05 SM00355 3/10 356 378 .. 1 23 [] 27.8 0.0015 SM00355 4/10 384 406 .. 1 23 [] 28.3 0.001 SM00355 5/10 412 434 .. 1 23 [] 29.4 0.00049 SM00355 6/10 440 462 .. 1 23 [] 26.5 0.0037 SM00355 7/10 468 490 .. 1 23 [] 31.4 0.00012 SM00355 8/10 496 518 .. 1 23 [] 31.4 0.00012 SM00355 9/10 524 546 .. 1 23 [] 30.9 0.00017 SM00355 10/10 552 574 .. 1 23 [] 29.3 0.00051 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 103 to 158: score 89.9, E = 3.1e-22 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF+DVA+dF++EEW++LDpaQr dVMlENY+nLvSL ++vsk KIAA1874 103 VTFKDVAMDFTPEEWGKLDPAQR----DVMLENYRNLVSLW-LPVSK 144 pdliskLEqgeEpwi<-* + LE g+Ep KIAA1874 145 -PESHNLENGKEPLK 158 SM00355: domain 1 of 10, from 301 to 323: score 23.8, E = 0.025 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+ Cg+ f+ ++ L+rH+rvH KIAA1874 301 HKCND-CGELFTYHsVLIRHQRVH 323 SM00355: domain 2 of 10, from 329 to 351: score 33.1, E = 3.8e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs++ +L++H+r+H KIAA1874 329 YTCNE-CGKSFSHRaNLTKHQRTH 351 SM00355: domain 3 of 10, from 356 to 378: score 27.8, E = 0.0015 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C+k+f+ ++L H+r+H KIAA1874 356 FECSE-CKKTFTESsSLATHQRIH 378 SM00355: domain 4 of 10, from 384 to 406: score 28.3, E = 0.001 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ ++L++H+ +H KIAA1874 384 YECNE-CGKGFNRStHLVQHQLIH 406 SM00355: domain 5 of 10, from 412 to 434: score 29.4, E = 0.00049 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+k f + +aL++H+r+H KIAA1874 412 YECNE-CDKAFIHSsALIKHQRTH 434 SM00355: domain 6 of 10, from 440 to 462: score 26.5, E = 0.0037 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ ++L++H+rvH KIAA1874 440 YKCQE-CGKAFSHCsSLTKHQRVH 462 SM00355: domain 7 of 10, from 468 to 490: score 31.4, E = 0.00012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fs+ ++L++H+r+H KIAA1874 468 YECSE-CGKTFSQStHLVQHQRIH 490 SM00355: domain 8 of 10, from 496 to 518: score 31.4, E = 0.00012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fs+ +++ +H+r+H KIAA1874 496 YECNE-CGKTFSRSsNFAKHQRIH 518 SM00355: domain 9 of 10, from 524 to 546: score 30.9, E = 0.00017 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f + +aL++H+r+H KIAA1874 524 YKCSE-CGKAFIHSsALIQHQRTH 546 SM00355: domain 10 of 10, from 552 to 574: score 29.3, E = 0.00051 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgksf+ ++L+rH+rvH KIAA1874 552 FRCNE-CGKSFKCSsSLIRHQRVH 574 //