HUGE

Gene/Protein Characteristic Table for KIAA1875

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05725
Accession No. :	AB058778
Description :
HUGO Gene Name :
Clone Name :	pf00972 [Vector Info]
Source :	Human brain (hippocampus)

Features of the cloned DNA sequence	Description

Length: 7119 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 2022 bp

Genome contig ID gi51511724f_145134617
PolyA signal sequence
(AATAGA,-21)
+----*----+----*----+----*----+----
ACTACAGCCTCGGCAATAGAGCGAGACTCTGTGTC
Flanking genome sequence
(110591 - 110640)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAATTATCTAGTTTAGGCCGGGTGTGGTGGCTCACGCCTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 8 f 145234617 145245206 23 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 922 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
CAB70740	0	99.2	hypothetical pr...	Homo sapiens
EAW82149	7.2e-151	99.8	hCG2040155 [Hom...	Homo sapiens
XP_001155567	4.8e-145	96.5	hypothetical pr...	Pan troglodytes
BAC85899	4.7e-128	94.0	unnamed protein...	Homo sapiens
XP_001155629	2.8e-122	90.9	hypothetical pr...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GGAGTTTCAGTGGCCATGTGG

Primer_r
: GGAGAGGAAAGTGCTAAGGTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 8

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GGAGTTTCAGTGGCCATGTGG
Primer_r	: GGAGAGGAAAGTGCTAAGGTC
PCR product length	: 95 bp
PCR conditions	: 15 °C66 sec60 °C30 sec150 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	2022 bp
Genome contig ID	gi51511724f_145134617
PolyA signal sequence (AATAGA,-21)	+--------+--------+----*----+---- ACTACAGCCTCGGCAATAGAGCGAGACTCTGTGTC
Flanking genome sequence (110591 - 110640)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAATTATCTAGTTTAGGCCGGGTGTGGTGGCTCACGCCTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	8	f	145234617	145245206	23	99.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA1875

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information