hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15230906/chunk_1/iprscan-20080502-15230906.nocrc
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Query sequence: KIAA1879
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01477.13.fs PLAT/LH2 domain                                 70.7    1.9e-20   1
PF01825.11.fs Latrophilin/CL-1-like GPS domain                67.3      3e-19   1
PF01477.13.ls PLAT/LH2 domain                                 71.6    2.3e-18   1
PF01825.11.ls Latrophilin/CL-1-like GPS domain                69.2    1.2e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01825.11.fs   1/1     256   300 ..     1    48 []    67.3    3e-19
PF01825.11.ls   1/1     256   300 ..     1    48 []    69.2  1.2e-17
PF01477.13.fs   1/1     368   472 ..     1   117 [.    70.7  1.9e-20
PF01477.13.ls   1/1     368   484 ..     1   130 []    71.6  2.3e-18

Alignments of top-scoring domains:
PF01825.11.fs: domain 1 of 1, from 256 to 300: score 67.3, E = 3e-19
                   *->snptCvfWdeseggqGgWstdGCqlgvssndthttClCnHLTsFAvL
                      +  +CvfWde +   ++W+++GCq+g+ +++ +t+ClCnHLT+F++ 
    KIAA1879   256    FLSHCVFWDEVQ---ETWDDSGCQVGPRTSPYQTHCLCNHLTFFGST 299  

                   m<-*
                   +   
    KIAA1879   300 F    300  

PF01825.11.ls: domain 1 of 1, from 256 to 300: score 69.2, E = 1.2e-17
                   *->snptCvfWdeseggqGgWstdGCqlgvssndthttClCnHLTsFAvL
                      +  +CvfWde +   ++W+++GCq+g+ +++ +t+ClCnHLT+F++ 
    KIAA1879   256    FLSHCVFWDEVQ---ETWDDSGCQVGPRTSPYQTHCLCNHLTFFGST 299  

                   m<-*
                   +   
    KIAA1879   300 F    300  

PF01477.13.fs: domain 1 of 1, from 368 to 472: score 70.7, E = 1.9e-20
                   *->vsyqlivatggdstgagttgkvgislyGengeseqipldkgelkslp
                      ++y ++v tg  ++ga t +kv+++lyG +ge e ++l  ++     
    KIAA1879   368    YHYLVTVYTGH-RRGAATSSKVTVTLYGLDGEREPHHLADPDTP--- 410  

                   tlgagpgstfsftfdvdedlGelgavkiknehsglnswsptspewflksi
                     ++++g+++ f+  + + lGel  +++++++sg      ++p w+++++
    KIAA1879   411 --VFERGAVDAFLLSTLFPLGELRSLRLWHDNSG------DRPSWYVSRV 452  

                   tvedgptqgkvhFpCnsWvy<-*
                    v d+   +k++F CnsW++   
    KIAA1879   453 LVYDLVMDRKWYFLCNSWLS    472  

PF01477.13.ls: domain 1 of 1, from 368 to 484: score 71.6, E = 2.3e-18
                   *->vsyqlivatggdstgagttgkvgislyGengeseqipldkgelkslp
                      ++y ++v tg  ++ga t +kv+++lyG +ge e ++l  ++     
    KIAA1879   368    YHYLVTVYTGH-RRGAATSSKVTVTLYGLDGEREPHHLADPDTP--- 410  

                   tlgagpgstfsftfdvdedlGelgavkiknehsglnswsptspewflksi
                     ++++g+++ f+  + + lGel  +++++++sg      ++p w+++++
    KIAA1879   411 --VFERGAVDAFLLSTLFPLGELRSLRLWHDNSG------DRPSWYVSRV 452  

                   tvedgptqgkvhFpCnsWvypakg.deylslrif<-*
                    v d+   +k++F CnsW++   +  + + +++f   
    KIAA1879   453 LVYDLVMDRKWYFLCNSWLSI--NvGDCVLDKVF    484  

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