hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15230906/chunk_1/iprscan-20080502-15230906.nocrc
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Query sequence: KIAA1879
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00303                                                  50.0      3e-10   1
SM00308                                                  48.9    6.9e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00303    1/1     256   305 ..     1    51 []    50.0    3e-10
SM00308    1/1     368   487 ..     1   157 []    48.9  6.9e-10

Alignments of top-scoring domains:
SM00303: domain 1 of 1, from 256 to 305: score 50.0, E = 3e-10
                   *->snpiCvfWdesetgeWstrGCelvetnkpthttCsCnHLTsFAvLmd
                      + ++CvfWde +  +W+ +GC+++++++p++t+C+CnHLT F+    
    KIAA1879   256    FLSHCVFWDEVQ-ETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFL 301  

                   vspn<-*
                   v pn   
    KIAA1879   302 VMPN    305  

SM00308: domain 1 of 1, from 368 to 487: score 48.9, E = 6.9e-10
                   *->akykvtVtlgkkNvldfagttalgslLDgltdlLGrqsvslsLiGae
                      ++y vtV +g    ++ a t +               +v++ L+G +
    KIAA1879   368    YHYLVTVYTG---HRRGAATSS---------------KVTVTLYGLD 396  

                   gddntgrgkesklaylerplTtlpslfargstyefefdvdedfGelgavk
                           +e ++ +l +p+   +  f+rg+++ f   + + +Gel   +
    KIAA1879   397 --------GEREPHHLADPD---TPVFERGAVDAFLLSTLFPLGELRSLR 435  

                   iknehyglfwssprhseffLksitlkdlGptggkvhFpCnsWVypkkkpg
                   ++++++g+      ++ ++++++ + dl    +k +F CnsW+  + +++
    KIAA1879   436 LWHDNSGD------RPSWYVSRVLVYDL-VMDRKWYFLCNSWLSIN-VGD 477  

                   ykgkriFfan<-*
                      + +F+     
    KIAA1879   478 CVLDKVFPVA    487  

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