hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15313412/chunk_1/iprscan-20080502-15313412.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1884 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00084.11.fs Sushi domain (SCR repeat) 555.0 6.9e-164 12 PF00084.11.ls Sushi domain (SCR repeat) 552.6 3.7e-163 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00084.11.fs 1/12 3 47 .. 17 65 .] 26.1 9.4e-06 PF00084.11.ls 2/12 52 112 .. 1 65 [] 44.4 3.6e-10 PF00084.11.fs 2/12 52 112 .. 1 65 [] 42.5 5.8e-10 PF00084.11.ls 3/12 117 170 .. 1 65 [] 57.6 3.7e-14 PF00084.11.fs 3/12 117 170 .. 1 65 [] 55.8 1.3e-13 PF00084.11.ls 4/12 175 228 .. 1 65 [] 58.1 2.7e-14 PF00084.11.fs 4/12 175 228 .. 1 65 [] 56.3 9.3e-14 PF00084.11.ls 5/12 233 286 .. 1 65 [] 45.4 1.8e-10 PF00084.11.fs 5/12 233 286 .. 1 65 [] 43.6 3.1e-10 PF00084.11.ls 6/12 294 347 .. 1 65 [] 58.2 2.5e-14 PF00084.11.fs 6/12 294 347 .. 1 65 [] 56.4 8.8e-14 PF00084.11.ls 7/12 352 406 .. 1 65 [] 40.1 7e-09 PF00084.11.fs 7/12 352 406 .. 1 65 [] 38.3 7.1e-09 PF00084.11.ls 8/12 411 466 .. 1 65 [] 43.2 8.2e-10 PF00084.11.fs 8/12 411 466 .. 1 65 [] 41.4 1.1e-09 PF00084.11.ls 9/12 471 524 .. 1 65 [] 61.8 2e-15 PF00084.11.fs 9/12 471 524 .. 1 65 [] 60.0 7e-15 PF00084.11.ls 10/12 529 582 .. 1 65 [] 50.8 4.1e-12 PF00084.11.fs 10/12 529 582 .. 1 65 [] 49.0 1.3e-11 PF00084.11.ls 11/12 590 644 .. 1 65 [] 44.0 4.7e-10 PF00084.11.fs 11/12 590 644 .. 1 65 [] 42.2 7.1e-10 PF00084.11.fs 12/12 649 704 .. 1 65 [] 43.4 3.6e-10 PF00084.11.ls 12/12 649 704 .. 1 65 [] 45.2 2.1e-10 Alignments of top-scoring domains: PF00084.11.fs: domain 1 of 12, from 3 to 47: score 26.1, E = 9.4e-06 *->kttyeypvGdtvtytCneGYrlvG..sssitCtedggGgWsppllge +++y++ G+++ y+C eGY+l+ + ++++ C+++ G Ws+++ KIAA1884 3 GKEYTV--GTKAMYSCSEGYHLQAgaEATAECLDT--GLWSNRNVP- 44 lPkC<-* P+C KIAA1884 45 -PQC 47 PF00084.11.ls: domain 2 of 12, from 52 to 112: score 44.4, E = 3.6e-10 *->Cp.lppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssit Cp+ ++ +e+Gr++ t+y++ ++ C++GY+ G ++i+ KIAA1884 52 CPdVSSISVEHGRWRLIfETQYQF--QAQLMLICDPGYYYTGQRVIR 96 CtedggGgWsppllgelPkC<-* C+++ G+Ws + P+C KIAA1884 97 CQAN--GKWSLGDST--PTC 112 PF00084.11.fs: domain 2 of 12, from 52 to 112: score 42.5, E = 5.8e-10 *->Cp.lppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssit Cp+ ++ +e+Gr++ t+y++ ++ C++GY+ G ++i+ KIAA1884 52 CPdVSSISVEHGRWRLIfETQYQF--QAQLMLICDPGYYYTGQRVIR 96 CtedggGgWsppllgelPkC<-* C+++ G+Ws + P+C KIAA1884 97 CQAN--GKWSLGDST--PTC 112 PF00084.11.ls: domain 3 of 12, from 117 to 170: score 57.6, E = 3.7e-14 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ ++P ++NG+ + + y G t+ ++Cn GY+lvGs++ C+ KIAA1884 117 CG-ELPIPPNGHRIGT--LSVY--GATAIFSCNSGYTLVGSRVRECM 158 edggGgWsppllgelPkC<-* ++ G Ws+ + ++C KIAA1884 159 AN--GLWSGSE----VRC 170 PF00084.11.fs: domain 3 of 12, from 117 to 170: score 55.8, E = 1.3e-13 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ ++P ++NG+ + + y G t+ ++Cn GY+lvGs++ C+ KIAA1884 117 CG-ELPIPPNGHRIGT--LSVY--GATAIFSCNSGYTLVGSRVRECM 158 edggGgWsppllgelPkC<-* ++ G Ws+ + ++C KIAA1884 159 AN--GLWSGSE----VRC 170 PF00084.11.ls: domain 4 of 12, from 175 to 228: score 58.1, E = 2.7e-14 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ p +i NG++ + +y+y +v+y+Cn G+rl+G s+ C+ KIAA1884 175 CG-TPEPIVNGHINGE--NYSY--RGSVVYQCNAGFRLIGMSVRICQ 216 edggGgWsppllgelPkC<-* d +Ws+ + P C KIAA1884 217 QD--HHWSGKT----PFC 228 PF00084.11.fs: domain 4 of 12, from 175 to 228: score 56.3, E = 9.3e-14 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ p +i NG++ + +y+y +v+y+Cn G+rl+G s+ C+ KIAA1884 175 CG-TPEPIVNGHINGE--NYSY--RGSVVYQCNAGFRLIGMSVRICQ 216 edggGgWsppllgelPkC<-* d +Ws+ + P C KIAA1884 217 QD--HHWSGKT----PFC 228 PF00084.11.ls: domain 5 of 12, from 233 to 286: score 45.4, E = 1.8e-10 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+ +++ + s +y++ G +v+y+C +lvG+s+ +C+ KIAA1884 233 CG-HPGSPPHSQMSGD--SYTV--GAVVRYSCIGKRTLVGNSTRMCG 274 edggGgWsppllgelPkC<-* d G+W++ l P C KIAA1884 275 LD--GHWTGSL----PHC 286 PF00084.11.fs: domain 5 of 12, from 233 to 286: score 43.6, E = 3.1e-10 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+ +++ + s +y++ G +v+y+C +lvG+s+ +C+ KIAA1884 233 CG-HPGSPPHSQMSGD--SYTV--GAVVRYSCIGKRTLVGNSTRMCG 274 edggGgWsppllgelPkC<-* d G+W++ l P C KIAA1884 275 LD--GHWTGSL----PHC 286 PF00084.11.ls: domain 6 of 12, from 294 to 347: score 58.2, E = 2.5e-14 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+ + +G ++ G++++++C+ G +l+Gss+ tC+ KIAA1884 294 CG-DPGIPAHGIRLGD--SFDP--GTVMRFSCEAGHVLRGSSERTCQ 335 edggGgWsppllgelPkC<-* ++ G+Ws+ P+C KIAA1884 336 AN--GSWSGSQ----PEC 347 PF00084.11.fs: domain 6 of 12, from 294 to 347: score 56.4, E = 8.8e-14 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+ + +G ++ G++++++C+ G +l+Gss+ tC+ KIAA1884 294 CG-DPGIPAHGIRLGD--SFDP--GTVMRFSCEAGHVLRGSSERTCQ 335 edggGgWsppllgelPkC<-* ++ G+Ws+ P+C KIAA1884 336 AN--GSWSGSQ----PEC 347 PF00084.11.ls: domain 7 of 12, from 352 to 406: score 40.1, E = 7e-09 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+++ N+rv+ s + + ++++y+C+eGY+ G s +C KIAA1884 352 CG-NPGTPSNARVVFS-DGLVF--SSSIVYECREGYYATGLLSRHCS 394 edggGgWsppllgelPkC<-* + G+W++ P+C KIAA1884 395 VN--GTWTGSD----PEC 406 PF00084.11.fs: domain 7 of 12, from 352 to 406: score 38.3, E = 7.1e-09 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+++ N+rv+ s + + ++++y+C+eGY+ G s +C KIAA1884 352 CG-NPGTPSNARVVFS-DGLVF--SSSIVYECREGYYATGLLSRHCS 394 edggGgWsppllgelPkC<-* + G+W++ P+C KIAA1884 395 VN--GTWTGSD----PEC 406 PF00084.11.ls: domain 8 of 12, from 411 to 466: score 43.2, E = 8.2e-10 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG..sssit C+ +p+ + NG ++y + tvty+C +GY+++ ++ s++ KIAA1884 411 CG-DPGIPANGLRLGN--DFRY--NKTVTYQCVPGYMMEShrVSVLS 452 CtedggGgWsppllgelPkC<-* Ct+d +W++++ P+C KIAA1884 453 CTKD--RTWNGTK----PVC 466 PF00084.11.fs: domain 8 of 12, from 411 to 466: score 41.4, E = 1.1e-09 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG..sssit C+ +p+ + NG ++y + tvty+C +GY+++ ++ s++ KIAA1884 411 CG-DPGIPANGLRLGN--DFRY--NKTVTYQCVPGYMMEShrVSVLS 452 CtedggGgWsppllgelPkC<-* Ct+d +W++++ P+C KIAA1884 453 CTKD--RTWNGTK----PVC 466 PF00084.11.ls: domain 9 of 12, from 471 to 524: score 61.8, E = 2e-15 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ ppP i+NG+v+ s + G++vty C+eGY+l+ ++++tC KIAA1884 471 CK-PPPLIPNGKVVGS--DFMW--GSSVTYACLEGYQLSLPAVFTCE 512 edggGgWsppllgelPkC<-* ++ G+W+++l P+C KIAA1884 513 GN--GSWTGEL----PQC 524 PF00084.11.fs: domain 9 of 12, from 471 to 524: score 60.0, E = 7e-15 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ ppP i+NG+v+ s + G++vty C+eGY+l+ ++++tC KIAA1884 471 CK-PPPLIPNGKVVGS--DFMW--GSSVTYACLEGYQLSLPAVFTCE 512 edggGgWsppllgelPkC<-* ++ G+W+++l P+C KIAA1884 513 GN--GSWTGEL----PQC 524 PF00084.11.ls: domain 10 of 12, from 529 to 582: score 50.8, E = 4.1e-12 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+++ Gr + + ++y ++v+++C++ +lvGs++ C+ KIAA1884 529 CG-DPGVPSRGRREDR--GFSY--RSSVSFSCHPPLVLVGSPRRFCQ 570 edggGgWsppllgelPkC<-* d G+Ws++ P+C KIAA1884 571 SD--GTWSGTQ----PSC 582 PF00084.11.fs: domain 10 of 12, from 529 to 582: score 49.0, E = 1.3e-11 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+++ Gr + + ++y ++v+++C++ +lvGs++ C+ KIAA1884 529 CG-DPGVPSRGRREDR--GFSY--RSSVSFSCHPPLVLVGSPRRFCQ 570 edggGgWsppllgelPkC<-* d G+Ws++ P+C KIAA1884 571 SD--GTWSGTQ----PSC 582 PF00084.11.ls: domain 11 of 12, from 590 to 644: score 44.0, E = 4.7e-10 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C +p+++++G +s + y++ G+tv ++C++GY l+Gs++ tC+ KIAA1884 590 CA-DPGVPQFGIQNNS-QGYQV--GSTVLFRCQKGYLLQGSTTRTCL 632 edggGgWsppllgelPkC<-* ++ +Ws+++ P C KIAA1884 633 PN--LTWSGTP----PDC 644 PF00084.11.fs: domain 11 of 12, from 590 to 644: score 42.2, E = 7.1e-10 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C +p+++++G +s + y++ G+tv ++C++GY l+Gs++ tC+ KIAA1884 590 CA-DPGVPQFGIQNNS-QGYQV--GSTVLFRCQKGYLLQGSTTRTCL 632 edggGgWsppllgelPkC<-* ++ +Ws+++ P C KIAA1884 633 PN--LTWSGTP----PDC 644 PF00084.11.fs: domain 12 of 12, from 649 to 704: score 43.4, E = 3.6e-10 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG.sssitC C P+ + + + + + G t+ y+C+eG++l+G+s++ tC KIAA1884 649 CR--QPETPTHANVGALDLPSM--GYTLIYSCQEGFSLKGgSEHRTC 691 tedggGgWsppllgelPkC<-* +d G+W++ + P+C KIAA1884 692 KAD--GSWTGKP----PIC 704 PF00084.11.ls: domain 12 of 12, from 649 to 704: score 45.2, E = 2.1e-10 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG.sssitC C P+ + + + + + G t+ y+C+eG++l+G+s++ tC KIAA1884 649 CR--QPETPTHANVGALDLPSM--GYTLIYSCQEGFSLKGgSEHRTC 691 tedggGgWsppllgelPkC<-* +d G+W++ + P+C KIAA1884 692 KAD--GSWTGKP----PIC 704 //