hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15395587/chunk_1/iprscan-20080502-15395587.nocrc
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Query sequence: KIAA1888
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00005.17.ls ABC transporter                                147.6    3.1e-41   1
PF00005.17.fs ABC transporter                                145.8    1.1e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00005.17.fs   1/1     421   604 ..     1   224 []   145.8  1.1e-40
PF00005.17.ls   1/1     421   604 ..     1   224 []   147.6  3.1e-41

Alignments of top-scoring domains:
PF00005.17.fs: domain 1 of 1, from 421 to 604: score 145.8, E = 1.1e-40
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd
                      Ge+l+l+GpNGaGKST++++l G ++ Pt  +G++ l ++       
    KIAA1888   421    GEILGLLGPNGAGKSTIINILVGDIE-PT--SGQVFLGDYSS----- 459  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke
                       + +e ++ +k +gy++Q + l+  p  T++e               
    KIAA1888   460 ----ETSEDDDSLKCMGYCPQINPLW--PDTTLQEHF------------- 490  

                RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg
                    e +++ +g++++++++ +  + + + l++ +++              ++
    KIAA1888   491 -EIYGAVKGMsASDMKEVISRITHALDLKEHLQK-------------TVK 526  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge
                    L  G k++++ A  +l +p + lLDEP +g Dp++++++++++r   ++
    KIAA1888   527 KLPAGIKRKLCFALSMLGNPQITLLDEPSTGMDPKAKQHMWRAIRTAFKN 576  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   qgitvllitHdldlldrladrilvlenG<-*
                   + ++ +l+tH +++++ ++dr++++  G   
    KIAA1888   577 RKRAAILTTHYMEEAEAVCDRVAIMVSG    604  

PF00005.17.ls: domain 1 of 1, from 421 to 604: score 147.6, E = 3.1e-41
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd
                      Ge+l+l+GpNGaGKST++++l G ++ Pt  +G++ l ++       
    KIAA1888   421    GEILGLLGPNGAGKSTIINILVGDIE-PT--SGQVFLGDYSS----- 459  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke
                       + +e ++ +k +gy++Q + l+  p  T++e               
    KIAA1888   460 ----ETSEDDDSLKCMGYCPQINPLW--PDTTLQEHF------------- 490  

                RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg
                    e +++ +g++++++++ +  + + + l++ +++              ++
    KIAA1888   491 -EIYGAVKGMsASDMKEVISRITHALDLKEHLQK-------------TVK 526  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge
                    L  G k++++ A  +l +p + lLDEP +g Dp++++++++++r   ++
    KIAA1888   527 KLPAGIKRKLCFALSMLGNPQITLLDEPSTGMDPKAKQHMWRAIRTAFKN 576  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   qgitvllitHdldlldrladrilvlenG<-*
                   + ++ +l+tH +++++ ++dr++++  G   
    KIAA1888   577 RKRAAILTTHYMEEAEAVCDRVAIMVSG    604  

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