hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15445703/chunk_1/iprscan-20080502-15445703.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1891 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 159.6 2.4e-51 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 161.5 2e-45 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00443.19.fs 1/1 180 684 .. 1 318 [] 159.6 2.4e-51 PF00443.19.ls 1/1 180 684 .. 1 318 [] 161.5 2e-45 Alignments of top-scoring domains: PF00443.19.fs: domain 1 of 1, from 180 to 684: score 159.6, E = 2.4e-51 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl +g tGL+NlGNTCYmNSv+Q+Lf+ ++r+ +ls l KIAA1891 180 TGKTGLINLGNTCYMNSVIQALFMATDFRRQVLSL----------NL 216 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy +sl + l+ Lf+ l + ++ ap+ ++ +++ + f ++ KIAA1891 217 NGCNSLMKKLQHLFAFLAHTqREAYAPRIFFE--------ASRPPWFTPR 258 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx xx mQQDAhEFllfLLdgLhedlnrvnkkpytepess........dkrpd.ka QQD+ E+l+fLLd+Lh + ++++k++ ++s+ + ++++ +++ +ka KIAA1891 259 SQQDCSEYLRFLLDRLH-EEEKILKVQASHKPSEilecsetsLQEVAsKA 307 RF x xxxx xxxxxxxxxxxxxxxxxxxx a.eawk.nhltrnesiitdlFqGqlks....................... a + + ++++ ++++i + F+G+l+++ ++ ++++++++ + ++ + KIAA1891 308 AvLTETpRTSDGEKTLIEKMFGGKLRThirclncrstsqkveaftdlsla 357 RF .................................................. +++++ ++ + +++ ++++ ++++ + + +++++++ ++++ + KIAA1891 358 fcpssslenmsvqdpasspsiqdgglmqasvpgpseepvvynpttaafic 407 RF .................................................. ++ ++++ ++++++ ++++++ ++++++ +++ +++++++++++ + KIAA1891 408 dslvnektigsppnefycsentsvpnesnkilvnkdvpqkpggettpsvt 457 RF xxxxxxxxxxxxxxxxxxx ...............................klkikrLPpvLiihLKRFs + + ++ +++++ ++++ + ++ +++++i+ P++Li+ L RFs KIAA1891 458 dllnyflapeiltgdnqyycencaslqnaekTMQITEEPEYLILTLLRFS 507 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx yngetglnkKiddkVefPleLdlssycnaelkekevlrkdekieklkeer y+ + + Ki d+V++Pl L l + +++ + KIAA1891 508 YDQKYHVRRKILDNVSLPLVLELPVKRITSF------------------S 539 RF xx xxxxx xx xxx xxxx xxxxxxxxxxxxxxxxxxxxxxx qr.......dedgn.ne.eep.eeee.dneegenpptkYeLyaVvvHsGs +++++ + + + + +e+ ++ ++++e + + Y L +VvvHsG KIAA1891 540 SLseswsvdVDFTDlSEnLAKkLKPSgTDEASCTKLVPYLLSSVVVHSGI 589 RF xxxxxxxxxxxxx slssGHYiayikk..................................... s++sGHY++y+++ ++++++ + ++++ +++++ ++++++ + KIAA1891 590 SSESGHYYSYARNitstdssyqmyhqsealalassqshllgrdspsavfe 639 RF xxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx .....kkengkWykfDDekVsevteeevle.....rsssAYiLFY<-* ++ ++k +W++f+D++V+ + v++ +++ +++AY+L+Y KIAA1891 640 qdlenKEMSKEWFLFNDSRVTFTSFQSVQKitsrfPKDTAYVLLY 684 PF00443.19.ls: domain 1 of 1, from 180 to 684: score 161.5, E = 2e-45 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl +g tGL+NlGNTCYmNSv+Q+Lf+ ++r+ +ls l KIAA1891 180 TGKTGLINLGNTCYMNSVIQALFMATDFRRQVLSL----------NL 216 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy +sl + l+ Lf+ l + ++ ap+ ++ +++ + f ++ KIAA1891 217 NGCNSLMKKLQHLFAFLAHTqREAYAPRIFFE--------ASRPPWFTPR 258 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx xx mQQDAhEFllfLLdgLhedlnrvnkkpytepess........dkrpd.ka QQD+ E+l+fLLd+Lh + ++++k++ ++s+ + ++++ +++ +ka KIAA1891 259 SQQDCSEYLRFLLDRLH-EEEKILKVQASHKPSEilecsetsLQEVAsKA 307 RF x xxxx xxxxxxxxxxxxxxxxxxxx a.eawk.nhltrnesiitdlFqGqlks....................... a + + ++++ ++++i + F+G+l+++ ++ ++++++++ + ++ + KIAA1891 308 AvLTETpRTSDGEKTLIEKMFGGKLRThirclncrstsqkveaftdlsla 357 RF .................................................. +++++ ++ + +++ ++++ ++++ + + +++++++ ++++ + KIAA1891 358 fcpssslenmsvqdpasspsiqdgglmqasvpgpseepvvynpttaafic 407 RF .................................................. ++ ++++ ++++++ ++++++ ++++++ +++ +++++++++++ + KIAA1891 408 dslvnektigsppnefycsentsvpnesnkilvnkdvpqkpggettpsvt 457 RF xxxxxxxxxxxxxxxxxxx ...............................klkikrLPpvLiihLKRFs + + ++ +++++ ++++ + ++ +++++i+ P++Li+ L RFs KIAA1891 458 dllnyflapeiltgdnqyycencaslqnaekTMQITEEPEYLILTLLRFS 507 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx yngetglnkKiddkVefPleLdlssycnaelkekevlrkdekieklkeer y+ + + Ki d+V++Pl L l + +++ + KIAA1891 508 YDQKYHVRRKILDNVSLPLVLELPVKRITSF------------------S 539 RF xx xxxxx xx xxx xxxx xxxxxxxxxxxxxxxxxxxxxxx qr.......dedgn.ne.eep.eeee.dneegenpptkYeLyaVvvHsGs +++++ + + + + +e+ ++ ++++e + + Y L +VvvHsG KIAA1891 540 SLseswsvdVDFTDlSEnLAKkLKPSgTDEASCTKLVPYLLSSVVVHSGI 589 RF xxxxxxxxxxxxx slssGHYiayikk..................................... s++sGHY++y+++ ++++++ + ++++ +++++ ++++++ + KIAA1891 590 SSESGHYYSYARNitstdssyqmyhqsealalassqshllgrdspsavfe 639 RF xxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx .....kkengkWykfDDekVsevteeevle.....rsssAYiLFY<-* ++ ++k +W++f+D++V+ + v++ +++ +++AY+L+Y KIAA1891 640 qdlenKEMSKEWFLFNDSRVTFTSFQSVQKitsrfPKDTAYVLLY 684 //