hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15573544/chunk_1/iprscan-20080502-15573544.nocrc
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Query sequence: KIAA1898
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             37.3    4.8e-08   7
PF00560.23.fs Leucine Rich Repeat                             27.9    1.4e-06   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   6/7     180   203 ..     1    24 []    12.3      1.3

Alignments of top-scoring domains:
PF00560.23.ls: domain 6 of 7, from 180 to 203: score 12.3, E = 1.3
                   *->nLeeLdLsgCNpsltgs..lpssl.nl<-*
                      nL++LdL + N  l+g+ +l++ l  l   
    KIAA1898   180    NLRHLDLAY-N-LLEGHreLSP-LwLL    203  

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