hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15591912/chunk_1/iprscan-20080502-15591912.nocrc
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Query sequence: KIAA1899
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF04130.4.fs Spc97 / Spc98 family                         47.2    3.3e-14   3
PF04130.4.ls Spc97 / Spc98 family                        -27.8    1.6e-08   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF04130.4.ls   1/1     278   922 ..     1   784 []   -27.8  1.6e-08
PF04130.4.fs   3/3     799   922 ..   668   784 .]    37.8  1.9e-11

Alignments of top-scoring domains:
PF04130.4.ls: domain 1 of 1, from 278 to 922: score -27.8, E = 1.6e-08
                   *->LlrdlLYaLlGidGkyikfnneidYmDrNrnkneasateafklrvqi
                      ++r+ L  L+G+  k+++f+                  + +k+ v++
    KIAA1899   278    VIRETLWLLSGVK-KLFIFQL-----------------IDGKVTVRN 306  

                   skflprslrsllrrllelGlyYqsLieiareilsvekFiekssgfneirk
                      ++  + s lr +le +  Y +         ++++Fi++ +g++   +
    KIAA1899   307 NIIVTHLTHSCLRSVLEQIAAYGQVVF------RLQEFIDEVMGHS---S 347  

                   rs......asqlenkesvGlvgqAlcaaLseeLqdYyaliaqlEqqlrdd
                   +s  ++++  +    e++ ++ qA+  aL ++   +   +a +E  +   
    KIAA1899   348 ESmlpgsgSVPKKSTEAPFRTYQAFMWALYKYFISFKEELAEIEKCII-- 395  

                   lslsLfdlallslktdassskkslslrrLlrwlqpplsrlreLa.vskel
                                      +++  +l +++ +l p ls l+ L +v+ + 
    KIAA1899   396 ------------------NNDTTITLAIVVDKLAPRLSQLKVLHkVFSTG 427  

                   ilsvvlqiGkllnkiiNkasdklkvlkGgelLsllqFykfakekhGDpev
                   + ++v               d ++v + + lL++l  yk ++e++ + e+
    KIAA1899   428 V-AEV-------------PPDTRNVVRASHLLNTL--YKAILEYDNVGEA 461  

                   rkllekLL....teisgPyykmlenWiykGeLeDtygEFFIkeneditsm
                    +  ++LL +   e+++Py+  + +Wi++G L D  +EF I++n+ + ++
    KIAA1899   462 SEQTVSLLfslwVETVRPYLQTVDEWIVHGHLWDGAREFIIQRNKNV-PV 510  

                   slQvenskkyleeleklillkpedksdryWhkkYkLrp............
                                              + W + Y+L + +++++++++ +
    KIAA1899   511 N------------------------HRDFWYATYTLYSvsekteneekms 536  

                   ..................dmiPsFlpmdlAnkILltGKslNfLre.ccke
                   ++ + +++++++++++++ m+ sFl+  +   I ++GKs ++L++ +c e
    KIAA1899   537 dnasassgsdqgpssrqhTMV-SFLK-PVLKQIIMAGKSMQLLKNlQCAE 584  

                   lnikwsqepneiisNevkdINvnidknsdtnqssdssilisddvidkrir
                    + + +  +++                                       
    KIAA1899   585 STTCQAGARDA--------------------------------------- 595  

                   lerlNldqyissdHIkvgefasDlekSerrtsvgmnksiiNiKvkeNvsd
                                                                     
    KIAA1899     - -------------------------------------------------- -    

                   leKrflkky.................rdeyelesyeadksaeelkrlkll
                    e++ l     ++ +++ ++++++++++  e     +++ ++ + + + l
    KIAA1899   596 -ERKSLYTLflesvqsrlrhgedstpQVLTEQQATKENLMKMQSIAESHL 644  

                   syftdtsfeelIdeay..................................
                     ++ ++   +I+ a+   ++++ +++  +++   ++++++ + ++ + +
    KIAA1899   645 ELDDVHDPLLAINFARmyleqsdfhekfaggdvcvdrssesvtcqtfelt 694  

                   .............eeaakhLldllveeydLlgHlkalKrYLLLgqGDFiq
                    ++   ++ +++       L + l++ y L++ l+a+++++L++ GD + 
    KIAA1899   695 lrsclyphidkqyLDCCGNLMQTLKKDYRLVEYLQAMRNFFLMEGGDTMY 744  

                   afmdkakeeLGekkPhykknaiadllsNFFphkLtslLqlAl..rksnaf
                    f+   +++   +++         ++s      L+ +Lq+A+++r++ + 
    KIAA1899   745 DFYTSIFDKI--REK-----ETWQNVS-----FLNVQLQEAVgqRYPED- 781  

                   dknnlrlesitievdplkskdvedllnriktneenntnnmNevnNenkav
                    +                                                
    KIAA1899   782 -SS----------------------------------------------- 783  

                   davsdevlknldankkldsrvlepvpgdlnvtGWevfsLeYkvdwPLslv
                            +l +    +  + ++    l+v ++++++L+Ykv+wP ++v
    KIAA1899   784 ---------RLSI----SFENVDTAKKKLPVHILDGLTLSYKVPWPVDIV 820  

                   ftpevFlskYlriFrfLwrlKrvehqLemkiWkehmfnkgsnnasrklss
                   ++ e+  + Y+ +F  L++ K  ++ L   + + +    +++ + r l+ 
    KIAA1899   821 ISLEC-QKIYNQVFLLLLQIKWAKYSLD-VLLFGE--LVSTAEKPR-LKE 865  

                   .............pikreiaqalrrssllReeMlhFvknlqyYilfeVIE
                   +  +++++  + +p k++  q+++r++llR   +hFv++l +Yi+  +++
    KIAA1899   866 gliheqdtvaqfgPQKEPVRQQIHRMFLLRVKLMHFVNSLHNYIMTRILH 915  

                   snWqeHlq<-*
                   s+  e +q   
    KIAA1899   916 STGLE-FQ    922  

PF04130.4.fs: domain 3 of 3, from 799 to 922: score 37.8, E = 1.9e-11
                   *->lnvtGWevfsLeYkvdwPLslvftpevFlskYlriFrfLwrlKrveh
                      l+v ++++++L+Ykv+wP ++v++ e+  + Y+ +F  L++ K  ++
    KIAA1899   799    LPVHILDGLTLSYKVPWPVDIVISLEC-QKIYNQVFLLLLQIKWAKY 844  

                   qLemkiWkehmfnkgsnnasrklss.............pikreiaqalrr
                    L   + + +    +++ + r l+ +  +++++  + +p k++  q+++r
    KIAA1899   845 SLD-VLLFGE--LVSTAEKPR-LKEgliheqdtvaqfgPQKEPVRQQIHR 890  

                   ssllReeMlhFvknlqyYilfeVIEsnWqeHlq<-*
                   ++llR   +hFv++l +Yi+  +++s+  e +q   
    KIAA1899   891 MFLLRVKLMHFVNSLHNYIMTRILHSTGLE-FQ    922  

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