hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16160825/chunk_1/iprscan-20080502-16160825.nocrc
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Query sequence: KIAA1909
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                   87.6    1.1e-25   1
PF00621.11.ls RhoGEF domain                                   80.3    5.5e-21   1
PF00169.19.fs PH domain                                       22.8    1.7e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00621.11.fs   1/1     825   969 ..     1   178 [.    87.6  1.1e-25
PF00621.11.ls   1/1     825   991 ..     1   207 []    80.3  5.5e-21
PF00169.19.fs   1/1    1019  1115 ..     1    87 [.    22.8  1.7e-06

Alignments of top-scoring domains:
PF00621.11.fs: domain 1 of 1, from 825 to 969: score 87.6, E = 1.1e-25
                   *->vlkElleTEkkYvrdLeildnvy...mkpLreaaisskplLtpddie
                      + +E+++TE++Y+r L +++++y ++m++++ ++        + + +
    KIAA1909   825    IMAEMIATEREYIRCLGYVIDNYfpeMERMDLPQG------LRGKHH 865  

                   tiFsNiediyefh.reFLkssLearisssnfedlDekkiepsaqrlGdlF
                    iF+N+e++ +fh+++FL+ +Le +++               ++ +G  F
    KIAA1909   866 VIFGNLEKLHDFHqQHFLR-ELERCQHC--------------PLAVGRSF 900  

                   lelkaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassnt
                   l++ +e++++Y  Y +nkp +  ll++      n+ F+ +  e++ +   
    KIAA1909   901 LRH-EEQFGMYVIYSKNKPQSDALLSS----HGNAFFKDKQRELGDK--- 942  

                   gAkddavkltLqsLLlkPvqRilrYpLLLkeLLkh<-*
                            +L s+Ll PvqR+ +Y LLL++LLk+   
    KIAA1909   943 --------MDLASYLLRPVQRVAKYALLLQDLLKE    969  

PF00621.11.ls: domain 1 of 1, from 825 to 991: score 80.3, E = 5.5e-21
                   *->vlkElleTEkkYvrdLeildnvy...mkpLreaaisskplLtpddie
                      + +E+++TE++Y+r L +++++y ++m++++ ++        + + +
    KIAA1909   825    IMAEMIATEREYIRCLGYVIDNYfpeMERMDLPQG------LRGKHH 865  

                   tiFsNiediyefh.reFLkssLearisssnfedlDekkiepsaqrlGdlF
                    iF+N+e++ +fh+++FL+ +Le +++               ++ +G  F
    KIAA1909   866 VIFGNLEKLHDFHqQHFLR-ELERCQHC--------------PLAVGRSF 900  

                   lelkaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassnt
                   l++ +e++++Y  Y +nkp +  ll++      n+ F+ +  e++ +   
    KIAA1909   901 LRH-EEQFGMYVIYSKNKPQSDALLSS----HGNAFFKDKQRELGDK--- 942  

                   gAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkk
                            +L s+Ll PvqR+ +Y LLL++LLk+ +   +    ++L +
    KIAA1909   943 --------MDLASYLLRPVQRVAKYALLLQDLLKEASC--GLAQGQELGE 982  

                   aldalqdlaksiNe<-*
                         ++a+++ +   
    KIAA1909   983 -----LRAAEVVVC    991  

PF00169.19.fs: domain 1 of 1, from 1019 to 1115: score 22.8, E = 1.7e-06
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk.......kkpkg
                      + ++ ++ +   +++   R+++Lf+d +l+ k  k +++++ + +k 
    KIAA1909  1019    LRCRDEFIVCC-GRKKYLRHVFLFEDLILFSKTQKvegshdvYLYKQ 1064 

                   sipLsgiqvtkvpdnkrkncFeirt.dr....etlllqaeseeerkeWvk
                   s+   +i  t+ +       Fei+++ r+++++t++lqa+s+e +  W +
    KIAA1909  1065 SFKTAEIGMTENVGD-SGLRFEIWFrRRqksqDTYILQASSAEVKSAWTD 1113 

                   ai<-*
                    i   
    KIAA1909  1114 VI    1115 

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