HUGE

Gene/Protein Characteristic Table for KIAA1919

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05728
Accession No. :	AB067506
Description :	sodium-dependent glucose transporter 1.
HUGO Gene Name :
Clone Name :	hj08057 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5261 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4047 bp

Genome contig ID gi89161210f_111593802
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ACTCCAGCCTGGGCAACAGAGGGAGACTCCATCTC
Flanking genome sequence
(105263 - 105312)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAAAAAAAAGGAAATACAGTTGAATATGAGGGA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 6 f 111693802 111699063 1 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 403 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAG52663	1.5e-157	99.8	unnamed protein...	Homo sapiens
EDL87827	8e-110	74.2	rCG19957 [Rattu...	Rattus norvegicus
XP_574786	9.1e-110	74.2	similar to Na+ ...	Rattus norvegicus
EDL04934	3.6e-104	76.9	mCG1413 [Mus mu...	Mus musculus
EDL87830	2.7e-98	79.9	similar to Na+ ...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR011701 78 263 PF07690 Major facilitator superfamily MFS_1

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR011701	78	263	PF07690	Major facilitator superfamily MFS_1

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 9 ALHFSFALGAFLAPLLAKLALGP 31 SECONDARY 23

2 69 WAYAVIGTYMFLVSVIFFCLFLK 91 PRIMARY 23

3 110 KYHNALLCLLFLFFFFYVGAEVT 132 PRIMARY 23

4 153 AGLNSIFWGTFAACRGLAIFFAT 175 SECONDARY 23

5 180 GTMIVLSNIGSLTSSLFLVLFDK 202 SECONDARY 23

6 209 IATSVYGASMATTFPSGVSWIEQ 231 SECONDARY 23

7 239 SAAFFVIGASLGEMAIPAVIGIL 261 SECONDARY 23

8 271 VLYTSLGASIATGILFPVLYKLA 293 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	9	ALHFSFALGAFLAPLLAKLALGP	31	SECONDARY	23
2	69	WAYAVIGTYMFLVSVIFFCLFLK	91	PRIMARY	23
3	110	KYHNALLCLLFLFFFFYVGAEVT	132	PRIMARY	23
4	153	AGLNSIFWGTFAACRGLAIFFAT	175	SECONDARY	23
5	180	GTMIVLSNIGSLTSSLFLVLFDK	202	SECONDARY	23
6	209	IATSVYGASMATTFPSGVSWIEQ	231	SECONDARY	23
7	239	SAAFFVIGASLGEMAIPAVIGIL	261	SECONDARY	23
8	271	VLYTSLGASIATGILFPVLYKLA	293	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GACAGAAAGAGTGAGGACCAG

Primer_r
: GATTATAGACTTCAGCTGTGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 6

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	4047 bp
Genome contig ID	gi89161210f_111593802
PolyA signal sequence (None)	+--------+--------+----*----+---- ACTCCAGCCTGGGCAACAGAGGGAGACTCCATCTC
Flanking genome sequence (105263 - 105312)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAAAAAAAAGGAAATACAGTTGAATATGAGGGA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	6	f	111693802	111699063	1	99.0	Perfect prediction

Primer_f	: GACAGAAAGAGTGAGGACCAG
Primer_r	: GATTATAGACTTCAGCTGTGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1919

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information