hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16360660/chunk_1/iprscan-20080502-16360660.nocrc
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Query sequence: KIAA1921
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                 145.5    5.6e-39   6

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00612      1/6     255   306 ..     1    55 []     5.6        5
SM00612      2/6     307   353 ..     1    55 []    32.7  5.2e-05
SM00612      3/6     354   400 ..     1    55 []    32.7  5.2e-05
SM00612      4/6     401   448 ..     1    55 []    14.3     0.51
SM00612      5/6     449   491 ..     1    55 []    17.2     0.24
SM00612      6/6     492   540 ..     1    55 []    43.1  3.7e-08

Alignments of top-scoring domains:
SM00612: domain 1 of 6, from 255 to 306: score 5.6, E = 5
                   *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMp.tpR
                      +i  vGG+        + ++++l  v +++p +nkW+p++s+p + R
    KIAA1921   255    VIVLVGGRQM-----VgMTQRSLVAVTCWNPQNNKWYPLASLPfYDR 296  

                   sgagvaving<-*
                     ++v++ ++   
    KIAA1921   297 EFFSVVSAGD    306  

SM00612: domain 2 of 6, from 307 to 353: score 32.7, E = 5.2e-05
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       iY  GG+          g++l+ v++Y    ++W  v  M++pR++
    KIAA1921   307    NIYLSGGMES--------GVTLADVWCYMSLLDNWNLVSRMTVPRCR 345  

                   agvaving<-*
                   + + v +g   
    KIAA1921   346 HNSLVYDG    353  

SM00612: domain 3 of 6, from 354 to 400: score 32.7, E = 5.2e-05
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      kiY  GG           +  ++ vE+YD  tn+W+ v+++p +   
    KIAA1921   354    KIYTLGGLGV--------AGNVDHVERYDTITNQWEAVAPLPKAVHS 392  

                   agvaving<-*
                   a+++v++g   
    KIAA1921   393 AAATVCGG    400  

SM00612: domain 4 of 6, from 401 to 448: score 14.3, E = 0.51
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvp.sMptpRs
                      kiYv+GG + +       g++      Y p tn+W+ + ++M    +
    KIAA1921   401    KIYVFGGVNEA-------GRAAGVLQSYVPQTNTWSFIEsPMIDNKY 440  

                   gagvaving<-*
                     +v ++ng   
    KIAA1921   441 APAV-TLNG    448  

SM00612: domain 5 of 6, from 449 to 491: score 17.2, E = 0.24
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       +++ GG             + + + +YDpe ++ + +p+M++ R  
    KIAA1921   449    FVFILGG--A----------YARATTIYDPEKGNIKAGPNMNHSRQF 483  

                   agvaving<-*
                   ++++v++g   
    KIAA1921   484 CSAVVLDG    491  

SM00612: domain 6 of 6, from 492 to 540: score 43.1, E = 3.7e-08
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      kiY++GG   +      eg +l + E Y p tn+W+ +p Mp+p ++
    KIAA1921   492    KIYATGGIVSS------EGPALGNMEAYEPTTNTWTLLPHMPCPVFR 532  

                   agvaving<-*
                   +g++vi++   
    KIAA1921   533 HGCVVIKK    540  

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