hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16424865/chunk_1/iprscan-20080502-16424865.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1925
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00665.16.fs Integrase core domain                           41.1    5.8e-11   1
PF00665.16.ls Integrase core domain                           43.0    9.6e-10   1
PF05699.5.fs hAT family dimerisation domain                  16.5    0.00037   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00665.16.fs   1/1     189   345 ..     1   173 []    41.1  5.8e-11
PF00665.16.ls   1/1     189   345 ..     1   173 []    43.0  9.6e-10
PF05699.5.fs   1/1    1070  1117 ..    28    79 ..    16.5  0.00037

Alignments of top-scoring domains:
PF00665.16.fs: domain 1 of 1, from 189 to 345: score 41.1, E = 5.8e-11
                   *->r.srpnelwqmDitGpipvktkgg.kkyllvivDdfSrfivayplks
                        ++   + q+D++  +   +++g+++ +l+  D++++ ++ + lks
    KIAA1925   189    SiKEVSSRCQVDLI-DMQ-LNPDGeYRFILHYQDLCTKLTFLRSLKS 233  

                   ksdaetvlallkaalerrggkkgrpvdkpkiihsDnGseftskarepvnt
                   k  +e++ all+ ++   g         p +++sDnG+ef s+       
    KIAA1925   234 KRPTEVAHALLD-IFTIIGA--------PSVLQSDNGREFSSQ------- 267  

                   afqeflkelG.IkhsfsrpynPqdNGvvERfnrtLkeelrkllsfsleew
                    + e+ + + + k+ ++   ++q+++ +E +  + k+++  +++ + ++w
    KIAA1925   268 VVSELSNIWPeLKIVHGKSQTCQSQSSAEQTEDIRKRIFSWMQTNNSSHW 317  

                   eeal.talylyNrrrrhsllggltPaerlt<-*
                    e+l  ++   N+ +++s  ++ tP e  +   
    KIAA1925   318 TEFLwFIQMSQNQPYHRS-MQQ-TPCESAF    345  

PF00665.16.ls: domain 1 of 1, from 189 to 345: score 43.0, E = 9.6e-10
                   *->r.srpnelwqmDitGpipvktkgg.kkyllvivDdfSrfivayplks
                        ++   + q+D++  +   +++g+++ +l+  D++++ ++ + lks
    KIAA1925   189    SiKEVSSRCQVDLI-DMQ-LNPDGeYRFILHYQDLCTKLTFLRSLKS 233  

                   ksdaetvlallkaalerrggkkgrpvdkpkiihsDnGseftskarepvnt
                   k  +e++ all+ ++   g         p +++sDnG+ef s+       
    KIAA1925   234 KRPTEVAHALLD-IFTIIGA--------PSVLQSDNGREFSSQ------- 267  

                   afqeflkelG.IkhsfsrpynPqdNGvvERfnrtLkeelrkllsfsleew
                    + e+ + + + k+ ++   ++q+++ +E +  + k+++  +++ + ++w
    KIAA1925   268 VVSELSNIWPeLKIVHGKSQTCQSQSSAEQTEDIRKRIFSWMQTNNSSHW 317  

                   eeal.talylyNrrrrhsllggltPaerlt<-*
                    e+l  ++   N+ +++s  ++ tP e  +   
    KIAA1925   318 TEFLwFIQMSQNQPYHRS-MQQ-TPCESAF    345  

PF05699.5.fs: domain 1 of 1, from 1070 to 1117: score 16.5, E = 0.00037
                   *->eWWkeaqnssryPiLsklArdiLsiPvssaasErsFStgklgrvlde
                      ++W   + ++ yP+L  +A ++L +  s+  +E  FSt+    + ++
    KIAA1925  1070    SFWI--KAKNDYPELAEIALKLLLLFPSTYLCETGFSTL--SVIKTK 1112 

                   srnrl<-*
                   +rn+l   
    KIAA1925  1113 HRNSL    1117 

//