# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg05950mrp1.fasta.huge -Q ../query/KIAA1928.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1928, 757 aa vs ./tmplib.25089 library 1986748 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.4303+/-0.00825; mu= -5.1592+/- 0.557 mean_var=298.6705+/-72.213, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.074213 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0310 ( 2388 res) ee03470 (2388) 1408 165.1 7.5e-41 >>KIAA0310 ( 2388 res) ee03470 (2388 aa) initn: 1244 init1: 1033 opt: 1408 Z-score: 825.3 bits: 165.1 E(): 7.5e-41 Smith-Waterman score: 1461; 36.341% identity (62.516% similar) in 787 aa overlap (9-744:1513-2279) 10 20 30 KIAA19 TQNLIVLFQVILNDSEEQEEMRSFSGPLIREDVHKVDI ...:. . ::::::.: ::: ..:.::::. KIAA03 ARFGPGGQLIKVIPNLPSEGQPALVEVHSMEALLQHTSEQEEMRAFPGPLAKDDTHKVDV 1490 1500 1510 1520 1530 1540 40 50 60 70 80 90 KIAA19 MTFCQQKAAQSCKSETLGSRDSA-LLWQLLVLLCRQNGSMVGSDIAELLMQDCKKLEKYK ..: :.:: . ..:.: ...:: :::...::::::::..::.::::::..: . . KIAA03 INFAQNKAMKCLQNENLIDKESASLLWNFIVLLCRQNGTVVGTDIAELLLRDHRTVWLPG 1550 1560 1570 1580 1590 1600 100 110 120 130 140 150 KIAA19 RQPPVANLINLTDEDWPVLS---SGTPNL--LTGEIPPSVETPAQIVEKFTRLLYYGRKK ..: ::::..:.: . :: .: ::: .. . . .:.: .:: ::::: KIAA03 KSPNEANLIDFTNEAVEQVEEEESGEAQLSFLTGGPAAAASSLERETERFRELLLYGRKK 1610 1620 1630 1640 1650 1660 160 170 180 190 200 210 KIAA19 EALEWAMKNHLWGHALFLSSKMDPQTYSWVMSGFTSTLALNDPLQTLFQLMSGRIPQAAT .::: :::: ::::::.:.:::: .:.. ::. :...: .::::::..::::::.: :.: KIAA03 DALESAMKNGLWGHALLLASKMDSRTHARVMTRFANSLPINDPLQTVYQLMSGRMPAAST 1670 1680 1690 1700 1710 1720 220 230 240 250 260 270 KIAA19 CCGEKQWGDWRPHLAVILSNQAGDPELYQRAIVAIGDTLAGKGLVEAAHFCYLMAHVPFG :::...:::::::::..::: .. .. .:.....:::::..::..:::::::::.. :: KIAA03 CCGDEKWGDWRPHLAMVLSNLNNNMDVESRTMATMGDTLASRGLLDAAHFCYLMAQAGFG 1730 1740 1750 1760 1770 1780 280 290 300 310 320 330 KIAA19 HYTVKTDHLVLLGSSHSQEFLKFATTEAIQRTEIFEYCQMLGRPKSFIPSFQVYKLLYAS :: :: .:::.::.:: ::::::.::::::: .:: : :: .:::::.:..:. KIAA03 VYTKKTTKLVLIGSNHSLPFLKFATNEAIQRTEAYEYAQSLGAETCPLPSFQVFKFIYSC 1790 1800 1810 1820 1830 1840 340 350 360 370 380 390 KIAA19 RLADYGLVSQALHYCEAIGAAVLSQGESSHPVLLVELIKLAEKLKLSDPLVLERRSGDRD :::..::..::.::::::. ..:.: . :::. .:...: .:.: :: . :. . KIAA03 RLAEMGLATQAFHYCEAIAKSILTQPHLYSPVLISQLVQMASQLRLFDPQLKEKPEEESL 1850 1860 1870 1880 1890 1900 400 410 420 430 440 450 KIAA19 LEPDWLAQLRRQLEQKVAGDIGDPHPTRSDISGAGGTTTENTFYQDFSGCQGYSEAPGYR : ::..:. :.:... : : . . :: . . : : . :: KIAA03 AAPTWLVHLQ-QVERQIKEGAGVWHQDGALPQQCPGTPSSEMEQLDRPGLS----QPG-- 1910 1920 1930 1940 1950 460 470 480 490 500 KIAA19 SALWLTPEQTCLLQPSPQQ--P----FPLQPGSYPAGGGAGQTGTPR---PFYSVPETHL :: .. . :::.. : .: : . : : :. . .: :. : KIAA03 -ALGIANPLLAVPAPSPEHSSPSVRLLPSAPQTLPDGPLASPARVPMFPVPLPPGPLEPG 1960 1970 1980 1990 2000 2010 510 520 530 540 550 KIAA19 PGT---GSSVAVTEATGGTV---------WEEMLQTHLGPGENTVSQETSQPPDGQEVIS :: : ... : .: . ...:: .: . : ::. : :. . KIAA03 PGCVTPGPALGFLEPSGPGLPPGVPPLQERRHLLQEARSPDPGIVPQEA---PVGNSLSE 2020 2030 2040 2050 2060 2070 560 570 580 590 600 KIAA19 KPQTPLAARARSISESSASSAKEDEKESSDEADKN--------SPRNTAQR-GKLGDGKE . . .. ... : . .: . :.::.. :: ..: :. . . KIAA03 LSEENFDGKFANLTPSRTVPDSE-APPGWDRADSGPTQPPLSLSPAPETKRPGQAAKKET 2080 2090 2100 2110 2120 2130 610 620 630 640 650 KIAA19 HTKSSGFGWF-SWFRSK-------PT-KNASPAGDEDSS---DSPDSEETPRASSPHQAG . ..: .:: :. .: : :: : . :: .. . . :: .: : .. KIAA03 KEPKKGESWFFRWLPGKKKTEAYLPDDKNKSIVWDEKKNQWVNLNEPEEEKKAPPPPPTS 2140 2150 2160 2170 2180 2190 660 670 680 690 700 KIAA19 LGLSLTPSPES---PPLPDVSAFSRGRGGGEGRGSASSGGAAAGAGVGGLSGPESVSFEL . .. .: . :: :. .:: .: ..: . ... . .:. . :. KIAA03 MPKTVQAAPPALPGPPGAPVNMYSRRAAGTRARYVDVLNPSGTQRSEPALAPADFVA--- 2200 2210 2220 2230 2240 710 720 730 740 750 KIAA19 CSNPGVLLPPPALKGAVPLYNPSQVPQLPTATSLNRPNRLAQRRYPTQPC : . :: :. . :: . .. :::: .:. . : KIAA03 ---PLAPLPIPS-NLFVPTPD-AEEPQLPDGTGREGPAAARGLANPEPAPEPKVLSSAAS 2250 2260 2270 2280 2290 2300 KIAA03 LPGSELPSSRPEGSQGGELSRCSSMSSLSREVSQHFNQAPGDLPAAGGPPSGAMPFYNPA 2310 2320 2330 2340 2350 2360 757 residues in 1 query sequences 1986748 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:22:27 2008 done: Thu Dec 18 15:22:27 2008 Total Scan time: 0.570 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]