# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj08985mrp1.fasta.huge -Q ../query/KIAA1929.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1929, 410 aa
 vs ./tmplib.25089 library

1987095 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.9811+/-0.00543; mu= 15.6516+/- 0.371
 mean_var=112.1298+/-26.063, 0's: 0 Z-trim: 3  B-trim: 9 in 1/39
 Lambda= 0.121119

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1471  ( 1421 res)   fj02383s1                  (1421)  459 91.1 4.4e-19


>>KIAA1471  ( 1421 res)   fj02383s1                       (1421 aa)
 initn: 362 init1: 197 opt: 459  Z-score: 434.5  bits: 91.1 E(): 4.4e-19
Smith-Waterman score: 459;  33.219% identity (63.014% similar) in 292 aa overlap (72-356:17-294)

              50        60        70        80        90        100
KIAA19 DKELQMRTGAENLYRATSNNRVRETVALELSYVNSNLQLLKEELEELSGGVD-PGRHGSE
                                     :.....::    .:.:  ::   :.  . :
KIAA14               FPPVTSDFRHEGAGLGSWLSQQLQ----QLREWPGGRRVPA--AME
                             10        20            30          40

               110       120       130       140       150         
KIAA19 AVT-VPMIPLGLKETKELDWSTPLKELISVHFGEDGASYEAEIRELEALRQ-AMRTPSRN
       ::  .::: : :::. .. ..  .:...  ..::.  .:. :...:: ::: :.:.: :.
KIAA14 AVPRMPMIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVP-RD
               50        60        70        80        90          

      160       170        180       190       200       210       
KIAA19 ESGLELLTAYYNQLCFLDARF-LTPARSLGLFFHWYDSLTGVPAQQRALAFEKGSVLFNI
         :  .:  : .:: .:..:  .  ..  ..   : . ..:  . .. . .:.. .:.:.
KIAA14 FEGCSVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSGKSVAHEDIKYEQACILYNL
     100       110       120       130       140       150         

       220       230       240       250       260       270       
KIAA19 GALHTQIGARQDRSCTEGARRAMEAFQRAAGAFSLLRENFSHAPSPDMSAASLCALEQLM
       ::::...:: . :   :: . .   :: :::::. :::.: .: : :::   :    .::
KIAA14 GALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMSRQILTLNVNLM
     160       170       180       190       200       210         

       280       290       300       310       320       330       
KIAA19 MAQAQECVFEGLSPPASMAPQDCLAQLRLAQEAAQVAAEYRLVHRTMAQPPVHDY---VP
       ..:::::..:      ::   :   .. .:. .:::.  :. . :.. .: . .    . 
KIAA14 LGQAQECLLE-----KSM--LDNRKSFLVARISAQVVDYYKEACRALENPDTASLLGRIQ
     220            230         240       250       260       270  

          340       350       360       370       380       390    
KIAA19 VSWTALVHVKAEYFRSLAHYHVAMALCDGSRECPPHLPMVLPRPPRAGLTASLSPSSDRG
        .:  ::..:  :: ..:: :.                                      
KIAA14 KDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLAKGQPDTV
            280       290       300       310       320       330  




410 residues in 1 query   sequences
1987095 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:29 2008 done: Thu Dec 18 15:22:29 2008
 Total Scan time:  0.400 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]