hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16492146/chunk_1/iprscan-20080502-16492146.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1929
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03097.8.fs BRO1-like domain                               426.8   2.1e-129   1
PF03097.8.ls BRO1-like domain                               315.6    8.2e-92   1
PF02185.6.ls Hr1 repeat                                      82.7    1.1e-21   1
PF02185.6.fs Hr1 repeat                                      80.8    1.3e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02185.6.fs   1/1      32   104 ..     1    82 []    80.8  1.3e-21
PF02185.6.ls   1/1      32   104 ..     1    82 []    82.7  1.1e-21
PF03097.8.fs   1/1     105   365 ..     1   283 [.   426.8 2.1e-129
PF03097.8.ls   1/1     105   394 ..     1   446 []   315.6  8.2e-92

Alignments of top-scoring domains:
PF02185.6.fs: domain 1 of 1, from 32 to 104: score 80.8, E = 1.3e-21
                   *->drleqLrkkievElkikeGAEnmlrlysgKatkdrkvlqeaqqklre
                      +r++q+ ++i++El++++GAEn++r     at++ +v+++++ +l++
    KIAA1929    32    SRRAQIHQQIDKELQMRTGAENLYR-----ATSNNRVRETVALELSY 73   

                   SkqKRLENielLkeeLeelqlevqpsdpeneslee<-*
                   ++++    ++lLkeeLeel+  v p   ++e+++    
    KIAA1929    74 VNSN----LQLLKEELEELSGGVDPGRHGSEAVTV    104  

PF02185.6.ls: domain 1 of 1, from 32 to 104: score 82.7, E = 1.1e-21
                   *->drleqLrkkievElkikeGAEnmlrlysgKatkdrkvlqeaqqklre
                      +r++q+ ++i++El++++GAEn++r     at++ +v+++++ +l++
    KIAA1929    32    SRRAQIHQQIDKELQMRTGAENLYR-----ATSNNRVRETVALELSY 73   

                   SkqKRLENielLkeeLeelqlevqpsdpeneslee<-*
                   ++++    ++lLkeeLeel+  v p   ++e+++    
    KIAA1929    74 VNSN----LQLLKEELEELSGGVDPGRHGSEAVTV    104  

PF03097.8.fs: domain 1 of 1, from 105 to 365: score 426.8, E = 2.1e-129
                   *->pllalplKeTkevDlakpLkdyIkrtYgedpesqkfeddklaeLddL
                      p+++l+lKeTke+D+++pLk +I+ ++ged++s  +e++ + eL++L
    KIAA1929   105    PMIPLGLKETKELDWSTPLKELISVHFGEDGAS--YEAE-IRELEAL 148  

                   RnnavlrtpdrseaglelLyrYYaQLeaLelRFPsdsdrqiknveFtWyD
                   R+++  rtp+r+e+glelL +YY QL++L+ RF  +  r+++ ++F+WyD
    KIAA1929   149 RQAM--RTPSRNESGLELLTAYYNQLCFLDARFLTPA-RSLG-LFFHWYD 194  

                   afgygslFGtgkpvsqtsLaFEKasVLFNigALySqiAasqdRatdeGLK
                   ++       tg+p+ q+ LaFEK sVLFNigAL++qi+a+qdR+++eG +
    KIAA1929   195 SL-------TGVPAQQRALAFEKGSVLFNIGALHTQIGARQDRSCTEGAR 237  

                   tAchyFQaAAGcFayLrEnflnappsspsvDlseetLgaLenLMLAQAQE
                   +A+ +FQ+AAG+F  LrEnf++ap    s+D+s+++L+aLe+LM+AQAQE
    KIAA1929   238 RAMEAFQRAAGAFSLLRENFSHAP----SPDMSAASLCALEQLMMAQAQE 283  

                   cfweKaildgdaskkdsli..lLkaAKLAaQvselYeeAlraYkmmteap
                   c++e +  +   s+ +  +  +L++A++AaQv+  Y  ++r    m+++p
    KIAA1929   284 CVFEGLSPPA--SMAPQDClaQLRLAQEAAQVAAEYRLVHRT---MAQPP 328  

                   vspyidkeWikhvqvKaahFaAlAhYrqalaleDekkk<-*
                   v +y++ +W+ +v+vKa++F++lAhY++a+al+ + ++   
    KIAA1929   329 VHDYVPVSWTALVHVKAEYFRSLAHYHVAMALC-DGSR    365  

PF03097.8.ls: domain 1 of 1, from 105 to 394: score 315.6, E = 8.2e-92
                   *->pllalplKeTkevDlakpLkdyIkrtYgedpesqkfeddklaeLddL
                      p+++l+lKeTke+D+++pLk +I+ ++ged++s  +e++ + eL++L
    KIAA1929   105    PMIPLGLKETKELDWSTPLKELISVHFGEDGAS--YEAE-IRELEAL 148  

                   RnnavlrtpdrseaglelLyrYYaQLeaLelRFPsdsdrqiknveFtWyD
                   R+++  rtp+r+e+glelL +YY QL++L+ RF  +  r+++ ++F+WyD
    KIAA1929   149 RQAM--RTPSRNESGLELLTAYYNQLCFLDARFLTPA-RSLG-LFFHWYD 194  

                   afgygslFGtgkpvsqtsLaFEKasVLFNigALySqiAasqdRatdeGLK
                   ++       tg+p+ q+ LaFEK sVLFNigAL++qi+a+qdR+++eG +
    KIAA1929   195 SL-------TGVPAQQRALAFEKGSVLFNIGALHTQIGARQDRSCTEGAR 237  

                   tAchyFQaAAGcFayLrEnflnappsspsvDlseetLgaLenLMLAQAQE
                   +A+ +FQ+AAG+F  LrEnf++ap    s+D+s+++L+aLe+LM+AQAQE
    KIAA1929   238 RAMEAFQRAAGAFSLLRENFSHAP----SPDMSAASLCALEQLMMAQAQE 283  

                   cfweKaildgdaskkdsli..lLkaAKLAaQvselYeeAlraYkmmteap
                   c++e +  +   s+ +  +  +L++A++AaQv+  Y  ++r    m+++p
    KIAA1929   284 CVFEGLSPPA--SMAPQDClaQLRLAQEAAQVAAEYRLVHRT---MAQPP 328  

                   vspyidkeWikhvqvKaahFaAlAhYrqalaleDekkkyGeeIarLqkAl
                   v +y++ +W+ +v+vKa++F++lAhY++a+al+              ++ 
    KIAA1929   329 VHDYVPVSWTALVHVKAEYFRSLAHYHVAMALC--------------DGS 364  

                   sQLYdmPEGlptiLkdeeRRllkeAlkkkkglpaeealrshplcshlrki
                                                                     
    KIAA1929   365 R------------------------------------------------- 365  

                   DslqedLkglksvvkekLkraeKDNDfIYlqpVPsessLppikpasmVKp
                                                           +++ ++mV p
    KIAA1929   366 ---------------------------------------ECPPHLPMVLP 376  

                   ippeevlkpqdeletdkpevgdLFkkLVPlaVhealsaYsErkdklvrae
                    pp + l                         + +ls  s        ++
    KIAA1929   377 RPPRAGL-------------------------TASLSPSS--------DR 393  

                   v<-*
                       
    KIAA1929   394 G    394  

//