# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk02059.fasta.huge -Q ../query/KIAA1934.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1934, 452 aa
 vs ./tmplib.25089 library

1987053 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.6888+/-0.00605; mu= 11.4048+/- 0.411
 mean_var=125.0802+/-28.548, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.114678

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0883  ( 373 res)   hk07589                     ( 373) 1047 184.0 1.4e-47


>>KIAA0883  ( 373 res)   hk07589                          (373 aa)
 initn: 1038 init1: 624 opt: 1047  Z-score: 945.8  bits: 184.0 E(): 1.4e-47
Smith-Waterman score: 1047;  46.685% identity (76.519% similar) in 362 aa overlap (5-353:10-366)

                    10        20        30        40        50     
KIAA19      KVGAMALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRV
                :::.::::::. :..: .:.:...::: .  :.:::....  :. :  ::.
KIAA08 SQSGSILRTMALALLEDWCRIMSVDEQKSLMVTGIPADFEEAEIQEVLQETLKSLGRYRL
               10        20        30        40        50        60

          60        70        80        90       100       110     
KIAA19 LGRMFRREDNAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLK
       ::..::...::.::..:: . .. ...::.. :::: :.:. :  : : ::: ::: ::.
KIAA08 LGKIFRKQENANAVLLELLEDTDVSAIPSEVQGKGGVWKVIFKTPNQDTEFLERLNLFLE
               70        80        90       100       110       120

         120       130              140          150       160     
KIAA19 DEGRSMTDVARALGC-----CSLPAES--LDAEVMPQV--RSP-PLEPPKESMWYRKLKV
        ::.... . ::::       ..:  :  : :... :.  ..: :: :    : ::::.:
KIAA08 KEGQTVSGMFRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLP----MRYRKLRV
              130       140       150       160           170      

         170       180       190       200       210       220     
KIAA19 FSGTASPSPGEETFEDWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDS
       :::.: :.: ::.:: ::::.:::.  : :.:.::.: : ::::::::..:...::.: :
KIAA08 FSGSAVPAPEEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPS
        180       190       200       210       220       230      

         230       240       250       260       270       280     
KIAA19 ITVEQCLDALKQIFGDKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSV
       :.::.::.:.::.::. :. :..: :.:.:  . :::::...:::: ::..::.:  .  
KIAA08 ISVEECLEAFKQVFGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPR
        240       250       260       270       280       290      

         290       300       310       320       330          340  
KIAA19 RSTDMIRLKHLLARVAMTPALRGKLELLDQRGCPPNFLELMKLIRDEEEWENT---EAVM
       : .:..::....: ....  :  .:. : ..: ::.::::::.::.::: : .   :.. 
KIAA08 RIADQVRLEQVMAGATLNQMLWCRLRELKDQGPPPSFLELMKVIREEEEEEASFENESIE
        300       310       320       330       340       350      

            350       360       370       380       390       400  
KIAA19 KNKEKPSGRGRGASGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGS
       . .:. .: ::                                                 
KIAA08 EPEER-DGYGRWNHEGDD                                          
        360        370                                             




452 residues in 1 query   sequences
1987053 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:39 2008 done: Thu Dec 18 15:22:39 2008
 Total Scan time:  0.490 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]