hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17395161/chunk_1/iprscan-20080502-17395161.nocrc
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Query sequence: KIAA1959
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00300.12.fs Phosphoglycerate mutase family 77.0 2e-22 1
PF00300.12.ls Phosphoglycerate mutase family 78.7 1.7e-20 1
PF00627.21.fs UBA/TS-N domain 37.2 6.1e-10 1
PF00627.21.ls UBA/TS-N domain 39.2 1.3e-08 1
PF00018.18.fs SH3 domain 28.5 5.1e-07 1
PF00018.18.ls SH3 domain 30.5 5.5e-06 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00627.21.fs 1/1 37 77 .. 1 41 [] 37.2 6.1e-10
PF00627.21.ls 1/1 37 77 .. 1 41 [] 39.2 1.3e-08
PF00018.18.ls 1/1 258 318 .. 1 59 [] 30.5 5.5e-06
PF00018.18.fs 1/1 258 318 .. 1 59 [] 28.5 5.1e-07
PF00300.12.fs 1/1 386 584 .. 1 216 [] 77.0 2e-22
PF00300.12.ls 1/1 386 584 .. 1 216 [] 78.7 1.7e-20
Alignments of top-scoring domains:
PF00627.21.fs: domain 1 of 1, from 37 to 77: score 37.2, E = 6.1e-10
*->ideeavkqLreMTGfdreeakkALeatng.nverAvewLleh<-*
+ +a+ L +M Gf+r++a+kAL +t+g++v++A +wL++h
KIAA1959 37 KHGSALDVLLSM-GFPRARAQKALASTGGrSVQAACDWLFSH 77
PF00627.21.ls: domain 1 of 1, from 37 to 77: score 39.2, E = 1.3e-08
*->ideeavkqLreMTGfdreeakkALeatng.nverAvewLleh<-*
+ +a+ L +M Gf+r++a+kAL +t+g++v++A +wL++h
KIAA1959 37 KHGSALDVLLSM-GFPRARAQKALASTGGrSVQAACDWLFSH 77
PF00018.18.ls: domain 1 of 1, from 258 to 318: score 30.5, E = 5.5e-06
*->kkvvALYDYearesdELsFkkGDvitvleksdd...pgWWkgrlkgt
++ +++Y+Y+++++dEL + +GD+i+ + ++ +++ gW +g +++t
KIAA1959 258 ETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTstsEGWIYGTSLTT 304
gGkeGliPsNYVepv<-*
g Gl P NY+++
KIAA1959 305 G-CSGLLPENYITKA 318
PF00018.18.fs: domain 1 of 1, from 258 to 318: score 28.5, E = 5.1e-07
*->kkvvALYDYearesdELsFkkGDvitvleksdd...pgWWkgrlkgt
++ +++Y+Y+++++dEL + +GD+i+ + ++ +++ gW +g +++t
KIAA1959 258 ETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTstsEGWIYGTSLTT 304
gGkeGliPsNYVepv<-*
g Gl P NY+++
KIAA1959 305 G-CSGLLPENYITKA 318
PF00300.12.fs: domain 1 of 1, from 386 to 584: score 77.0, E = 2e-22
*->rlyLvRHGete............wlNaenlqeegr.i.....s.q..
l++ RHGe + ++ ++ + a +gr i+++ +++++
KIAA1959 386 CLFVCRHGERMdvvfgkywlsqcF-DA-----KGRyIrtnlnMpHsl 426
..lqGwt........LtekGreQAralgkrllqLkvqavesrtaslklse
++ G ++ +++ + t G QAr++g++ L
KIAA1959 427 pqRSGGFrdyekdapITVFGCMQARLVGEA---LL--------------- 458
elgipfdaiysSPlkRArqTAeiilaelLkaelgnpedrwdeglktklpv
e + +d++y+SP +R++qTA+ +++ +l++ +l++
KIAA1959 459 ESNTIIDHVYCSPSLRCVQTAHN-ILK----GLQQEN---------HLKI 494
ivdprL...rErdfG.fe.dWsrceeGltfaelkekyp...eyr.wredp
+v+p+L + + G+ +++W + + +++ +++yr+ ++
KIAA1959 495 RVEPGLfewTKWVAGsTLpAW-----IPPSELAAANLSvdtTYRpHIPIS 539
adfrppgaakredeiegvPgGEeasladvaaRv.aaleeli....hpgen
+ + + s++ ++ R ++ +e+i++ +++g n
KIAA1959 540 KLVVSE------------------SYDTYISRSfQVTKEIIseckSKGNN 571
viliVsHGgviral<-*
+ liV+H+ ++ a+
KIAA1959 572 I-LIVAHASSLEAC 584
PF00300.12.ls: domain 1 of 1, from 386 to 584: score 78.7, E = 1.7e-20
*->rlyLvRHGete............wlNaenlqeegr.i.....s.q..
l++ RHGe + ++ ++ + a +gr i+++ +++++
KIAA1959 386 CLFVCRHGERMdvvfgkywlsqcF-DA-----KGRyIrtnlnMpHsl 426
..lqGwt........LtekGreQAralgkrllqLkvqavesrtaslklse
++ G ++ +++ + t G QAr++g++ L
KIAA1959 427 pqRSGGFrdyekdapITVFGCMQARLVGEA---LL--------------- 458
elgipfdaiysSPlkRArqTAeiilaelLkaelgnpedrwdeglktklpv
e + +d++y+SP +R++qTA+ +++ +l++ +l++
KIAA1959 459 ESNTIIDHVYCSPSLRCVQTAHN-ILK----GLQQEN---------HLKI 494
ivdprL...rErdfG.fe.dWsrceeGltfaelkekyp...eyr.wredp
+v+p+L + + G+ +++W + + +++ +++yr+ ++
KIAA1959 495 RVEPGLfewTKWVAGsTLpAW-----IPPSELAAANLSvdtTYRpHIPIS 539
adfrppgaakredeiegvPgGEeasladvaaRv.aaleeli....hpgen
+ + + s++ ++ R ++ +e+i++ +++g n
KIAA1959 540 KLVVSE------------------SYDTYISRSfQVTKEIIseckSKGNN 571
viliVsHGgviral<-*
+ liV+H+ ++ a+
KIAA1959 572 I-LIVAHASSLEAC 584
//