hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17445230/chunk_1/iprscan-20080502-17445230.nocrc
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Query sequence: KIAA1962
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00096.16.ls Zinc finger, C2H2 type 361.9 9.8e-106 12
PF00096.16.fs Zinc finger, C2H2 type 350.9 1.9e-102 13
PF02023.7.ls SCAN domain 190.4 3.9e-54 1
PF02023.7.fs SCAN domain 188.5 1.5e-53 1
PF01352.17.fs KRAB box 66.2 4e-18 1
PF01352.17.ls KRAB box 68.2 2.4e-17 1
PF01096.9.fs Transcription factor S-II (TFIIS) 51.2 3.8e-15 12
PF02892.5.fs BED zinc finger 40.1 3.9e-11 8
PF01286.9.fs XPA protein N-terminal 36.3 1.4e-09 7
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF02023.7.ls 1/1 48 142 .. 1 96 [] 190.4 3.9e-54
PF02023.7.fs 1/1 48 142 .. 1 96 [] 188.5 1.5e-53
PF01352.17.fs 1/1 172 212 .. 1 41 [] 66.2 4e-18
PF01352.17.ls 1/1 172 212 .. 1 41 [] 68.2 2.4e-17
PF00096.16.ls 2/12 441 463 .. 1 24 [] 30.8 4.5e-06
PF00096.16.fs 3/13 441 463 .. 1 24 [] 28.8 6.2e-06
PF00096.16.ls 3/12 469 491 .. 1 24 [] 31.8 2.3e-06
PF00096.16.fs 4/13 469 491 .. 1 24 [] 29.8 3.5e-06
PF00096.16.ls 4/12 497 519 .. 1 24 [] 35.1 2.2e-07
PF00096.16.fs 5/13 497 519 .. 1 24 [] 33.2 5.2e-07
PF00096.16.ls 5/12 525 547 .. 1 24 [] 38.1 2.8e-08
PF00096.16.fs 6/13 525 547 .. 1 24 [] 36.2 9.3e-08
PF00096.16.ls 6/12 553 575 .. 1 24 [] 37.1 5.5e-08
PF00096.16.fs 7/13 553 575 .. 1 24 [] 35.2 1.6e-07
PF00096.16.fs 8/13 581 603 .. 1 24 [] 34.2 2.8e-07
PF00096.16.ls 7/12 581 603 .. 1 24 [] 36.2 1.1e-07
PF00096.16.ls 8/12 609 631 .. 1 24 [] 22.2 0.0018
PF00096.16.ls 9/12 637 659 .. 1 24 [] 33.2 8.6e-07
PF00096.16.fs 10/13 637 659 .. 1 24 [] 31.2 1.6e-06
PF00096.16.ls 10/12 665 687 .. 1 24 [] 36.5 8.5e-08
PF00096.16.fs 11/13 665 687 .. 1 24 [] 34.5 2.3e-07
PF00096.16.fs 12/13 693 715 .. 1 24 [] 26.4 2.5e-05
PF00096.16.ls 11/12 693 715 .. 1 24 [] 28.3 2.4e-05
PF00096.16.fs 13/13 721 743 .. 1 24 [] 27.5 1.3e-05
PF00096.16.ls 12/12 721 743 .. 1 24 [] 29.5 1.1e-05
Alignments of top-scoring domains:
PF02023.7.ls: domain 1 of 1, from 48 to 142: score 190.4, E = 3.9e-54
*->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL
+ E fRqrFR f+Y e++GPr ALs+L eLC qWLrP++hTKEQIL
KIAA1962 48 ADAESFRQRFRWFCYSEVAGPRKALSQLWELCNQWLRPDIHTKEQIL 94
ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV<
ELLV EQFLtILP+E++ wV+ +hPeS+EE+VtL+EdL + l+e + +V
KIAA1962 95 ELLVFEQFLTILPGEIRIWVKSQHPESSEEVVTLIEDLTQMLEE-KDPV 142
-*
KIAA1962 - -
PF02023.7.fs: domain 1 of 1, from 48 to 142: score 188.5, E = 1.5e-53
*->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL
+ E fRqrFR f+Y e++GPr ALs+L eLC qWLrP++hTKEQIL
KIAA1962 48 ADAESFRQRFRWFCYSEVAGPRKALSQLWELCNQWLRPDIHTKEQIL 94
ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV<
ELLV EQFLtILP+E++ wV+ +hPeS+EE+VtL+EdL + l+e + +V
KIAA1962 95 ELLVFEQFLTILPGEIRIWVKSQHPESSEEVVTLIEDLTQMLEE-KDPV 142
-*
KIAA1962 - -
PF01352.17.fs: domain 1 of 1, from 172 to 212: score 66.2, E = 4e-18
*->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
+t +DVaV+F++ EW+ L+p Q++LY++V lEN +nL +l+
KIAA1962 172 ITLKDVAVNFSRGEWKKLEPFQKELYKEVLLENLRNLEFLD 212
PF01352.17.ls: domain 1 of 1, from 172 to 212: score 68.2, E = 2.4e-17
*->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
+t +DVaV+F++ EW+ L+p Q++LY++V lEN +nL +l+
KIAA1962 172 ITLKDVAVNFSRGEWKKLEPFQKELYKEVLLENLRNLEFLD 212
PF00096.16.ls: domain 2 of 12, from 441 to 463: score 30.8, E = 4.5e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+kC+ +Cgk+F +++L++H+r+H
KIAA1962 441 HKCS-KCGKAFGYSASLTKHRRIH 463
PF00096.16.fs: domain 3 of 13, from 441 to 463: score 28.8, E = 6.2e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+kC+ +Cgk+F +++L++H+r+H
KIAA1962 441 HKCS-KCGKAFGYSASLTKHRRIH 463
PF00096.16.ls: domain 3 of 12, from 469 to 491: score 31.8, E = 2.3e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+Fs++s+L+ H rtH
KIAA1962 469 YMCN-ECGKAFSDSSSLTPHHRTH 491
PF00096.16.fs: domain 4 of 13, from 469 to 491: score 29.8, E = 3.5e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+Fs++s+L+ H rtH
KIAA1962 469 YMCN-ECGKAFSDSSSLTPHHRTH 491
PF00096.16.ls: domain 4 of 12, from 497 to 519: score 35.1, E = 2.2e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+kC+ dCgk F+ +++L +H+r+H
KIAA1962 497 FKCD-DCGKGFTLSAHLIKHQRIH 519
PF00096.16.fs: domain 5 of 13, from 497 to 519: score 33.2, E = 5.2e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+kC+ dCgk F+ +++L +H+r+H
KIAA1962 497 FKCD-DCGKGFTLSAHLIKHQRIH 519
PF00096.16.ls: domain 5 of 12, from 525 to 547: score 38.1, E = 2.8e-08
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ dCg+ Fs++s+L +H+r+H
KIAA1962 525 YKCK-DCGRPFSDSSSLIQHQRIH 547
PF00096.16.fs: domain 6 of 13, from 525 to 547: score 36.2, E = 9.3e-08
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ dCg+ Fs++s+L +H+r+H
KIAA1962 525 YKCK-DCGRPFSDSSSLIQHQRIH 547
PF00096.16.ls: domain 6 of 12, from 553 to 575: score 37.1, E = 5.5e-08
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ CgksFs++s+L +H+r+H
KIAA1962 553 YTCS-NCGKSFSHSSSLSKHQRIH 575
PF00096.16.fs: domain 7 of 13, from 553 to 575: score 35.2, E = 1.6e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ CgksFs++s+L +H+r+H
KIAA1962 553 YTCS-NCGKSFSHSSSLSKHQRIH 575
PF00096.16.fs: domain 8 of 13, from 581 to 603: score 34.2, E = 2.8e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC +Cgk+F+++s L+rH+r+H
KIAA1962 581 YKCG-ECGKAFRQNSCLTRHQRIH 603
PF00096.16.ls: domain 7 of 12, from 581 to 603: score 36.2, E = 1.1e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC +Cgk+F+++s L+rH+r+H
KIAA1962 581 YKCG-ECGKAFRQNSCLTRHQRIH 603
PF00096.16.ls: domain 8 of 12, from 609 to 631: score 22.2, E = 0.0018
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y C+ dCg +Fs+ + H+r H
KIAA1962 609 YLCN-DCGMTFSHFTSVIYHQRLH 631
PF00096.16.ls: domain 9 of 12, from 637 to 659: score 33.2, E = 8.6e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +C k+F ++s L rH+r+H
KIAA1962 637 YKCN-QCEKAFPTHSLLSRHQRIH 659
PF00096.16.fs: domain 10 of 13, from 637 to 659: score 31.2, E = 1.6e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +C k+F ++s L rH+r+H
KIAA1962 637 YKCN-QCEKAFPTHSLLSRHQRIH 659
PF00096.16.ls: domain 10 of 12, from 665 to 687: score 36.5, E = 8.5e-08
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +CgksFs++s+L+ H r+H
KIAA1962 665 YKCK-ECGKSFSQSSSLNEHHRIH 687
PF00096.16.fs: domain 11 of 13, from 665 to 687: score 34.5, E = 2.3e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +CgksFs++s+L+ H r+H
KIAA1962 665 YKCK-ECGKSFSQSSSLNEHHRIH 687
PF00096.16.fs: domain 12 of 13, from 693 to 715: score 26.4, E = 2.5e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cg +Fsr+s L Hl++H
KIAA1962 693 YECN-YCGATFSRSSILVEHLKIH 715
PF00096.16.ls: domain 11 of 12, from 693 to 715: score 28.3, E = 2.4e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cg +Fsr+s L Hl++H
KIAA1962 693 YECN-YCGATFSRSSILVEHLKIH 715
PF00096.16.fs: domain 13 of 13, from 721 to 743: score 27.5, E = 1.3e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +C k+F+++s L rH+ H
KIAA1962 721 YECN-ECEKTFKSNSGLIRHRGFH 743
PF00096.16.ls: domain 12 of 12, from 721 to 743: score 29.5, E = 1.1e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +C k+F+++s L rH+ H
KIAA1962 721 YECN-ECEKTFKSNSGLIRHRGFH 743
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