hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17445230/chunk_1/iprscan-20080502-17445230.nocrc
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Query sequence: KIAA1962
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         361.9   9.8e-106  12
PF00096.16.fs Zinc finger, C2H2 type                         350.9   1.9e-102  13
PF02023.7.ls SCAN domain                                    190.4    3.9e-54   1
PF02023.7.fs SCAN domain                                    188.5    1.5e-53   1
PF01352.17.fs KRAB box                                        66.2      4e-18   1
PF01352.17.ls KRAB box                                        68.2    2.4e-17   1
PF01096.9.fs Transcription factor S-II (TFIIS)               51.2    3.8e-15  12
PF02892.5.fs BED zinc finger                                 40.1    3.9e-11   8
PF01286.9.fs XPA protein N-terminal                          36.3    1.4e-09   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02023.7.ls   1/1      48   142 ..     1    96 []   190.4  3.9e-54
PF02023.7.fs   1/1      48   142 ..     1    96 []   188.5  1.5e-53
PF01352.17.fs   1/1     172   212 ..     1    41 []    66.2    4e-18
PF01352.17.ls   1/1     172   212 ..     1    41 []    68.2  2.4e-17
PF00096.16.ls   2/12    441   463 ..     1    24 []    30.8  4.5e-06
PF00096.16.fs   3/13    441   463 ..     1    24 []    28.8  6.2e-06
PF00096.16.ls   3/12    469   491 ..     1    24 []    31.8  2.3e-06
PF00096.16.fs   4/13    469   491 ..     1    24 []    29.8  3.5e-06
PF00096.16.ls   4/12    497   519 ..     1    24 []    35.1  2.2e-07
PF00096.16.fs   5/13    497   519 ..     1    24 []    33.2  5.2e-07
PF00096.16.ls   5/12    525   547 ..     1    24 []    38.1  2.8e-08
PF00096.16.fs   6/13    525   547 ..     1    24 []    36.2  9.3e-08
PF00096.16.ls   6/12    553   575 ..     1    24 []    37.1  5.5e-08
PF00096.16.fs   7/13    553   575 ..     1    24 []    35.2  1.6e-07
PF00096.16.fs   8/13    581   603 ..     1    24 []    34.2  2.8e-07
PF00096.16.ls   7/12    581   603 ..     1    24 []    36.2  1.1e-07
PF00096.16.ls   8/12    609   631 ..     1    24 []    22.2   0.0018
PF00096.16.ls   9/12    637   659 ..     1    24 []    33.2  8.6e-07
PF00096.16.fs  10/13    637   659 ..     1    24 []    31.2  1.6e-06
PF00096.16.ls  10/12    665   687 ..     1    24 []    36.5  8.5e-08
PF00096.16.fs  11/13    665   687 ..     1    24 []    34.5  2.3e-07
PF00096.16.fs  12/13    693   715 ..     1    24 []    26.4  2.5e-05
PF00096.16.ls  11/12    693   715 ..     1    24 []    28.3  2.4e-05
PF00096.16.fs  13/13    721   743 ..     1    24 []    27.5  1.3e-05
PF00096.16.ls  12/12    721   743 ..     1    24 []    29.5  1.1e-05

Alignments of top-scoring domains:
PF02023.7.ls: domain 1 of 1, from 48 to 142: score 190.4, E = 3.9e-54
                   *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL
                       + E fRqrFR f+Y e++GPr ALs+L eLC qWLrP++hTKEQIL
    KIAA1962    48    ADAESFRQRFRWFCYSEVAGPRKALSQLWELCNQWLRPDIHTKEQIL 94   

                   ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV<
                   ELLV EQFLtILP+E++ wV+ +hPeS+EE+VtL+EdL + l+e + +V 
    KIAA1962    95 ELLVFEQFLTILPGEIRIWVKSQHPESSEEVVTLIEDLTQMLEE-KDPV  142  

                   -*
                     
    KIAA1962     -    -    

PF02023.7.fs: domain 1 of 1, from 48 to 142: score 188.5, E = 1.5e-53
                   *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL
                       + E fRqrFR f+Y e++GPr ALs+L eLC qWLrP++hTKEQIL
    KIAA1962    48    ADAESFRQRFRWFCYSEVAGPRKALSQLWELCNQWLRPDIHTKEQIL 94   

                   ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV<
                   ELLV EQFLtILP+E++ wV+ +hPeS+EE+VtL+EdL + l+e + +V 
    KIAA1962    95 ELLVFEQFLTILPGEIRIWVKSQHPESSEEVVTLIEDLTQMLEE-KDPV  142  

                   -*
                     
    KIAA1962     -    -    

PF01352.17.fs: domain 1 of 1, from 172 to 212: score 66.2, E = 4e-18
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                      +t +DVaV+F++ EW+ L+p Q++LY++V lEN +nL +l+   
    KIAA1962   172    ITLKDVAVNFSRGEWKKLEPFQKELYKEVLLENLRNLEFLD    212  

PF01352.17.ls: domain 1 of 1, from 172 to 212: score 68.2, E = 2.4e-17
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                      +t +DVaV+F++ EW+ L+p Q++LY++V lEN +nL +l+   
    KIAA1962   172    ITLKDVAVNFSRGEWKKLEPFQKELYKEVLLENLRNLEFLD    212  

PF00096.16.ls: domain 2 of 12, from 441 to 463: score 30.8, E = 4.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cgk+F  +++L++H+r+H   
    KIAA1962   441    HKCS-KCGKAFGYSASLTKHRRIH    463  

PF00096.16.fs: domain 3 of 13, from 441 to 463: score 28.8, E = 6.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cgk+F  +++L++H+r+H   
    KIAA1962   441    HKCS-KCGKAFGYSASLTKHRRIH    463  

PF00096.16.ls: domain 3 of 12, from 469 to 491: score 31.8, E = 2.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs++s+L+ H rtH   
    KIAA1962   469    YMCN-ECGKAFSDSSSLTPHHRTH    491  

PF00096.16.fs: domain 4 of 13, from 469 to 491: score 29.8, E = 3.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs++s+L+ H rtH   
    KIAA1962   469    YMCN-ECGKAFSDSSSLTPHHRTH    491  

PF00096.16.ls: domain 4 of 12, from 497 to 519: score 35.1, E = 2.2e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ dCgk F+ +++L +H+r+H   
    KIAA1962   497    FKCD-DCGKGFTLSAHLIKHQRIH    519  

PF00096.16.fs: domain 5 of 13, from 497 to 519: score 33.2, E = 5.2e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ dCgk F+ +++L +H+r+H   
    KIAA1962   497    FKCD-DCGKGFTLSAHLIKHQRIH    519  

PF00096.16.ls: domain 5 of 12, from 525 to 547: score 38.1, E = 2.8e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ dCg+ Fs++s+L +H+r+H   
    KIAA1962   525    YKCK-DCGRPFSDSSSLIQHQRIH    547  

PF00096.16.fs: domain 6 of 13, from 525 to 547: score 36.2, E = 9.3e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ dCg+ Fs++s+L +H+r+H   
    KIAA1962   525    YKCK-DCGRPFSDSSSLIQHQRIH    547  

PF00096.16.ls: domain 6 of 12, from 553 to 575: score 37.1, E = 5.5e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  CgksFs++s+L +H+r+H   
    KIAA1962   553    YTCS-NCGKSFSHSSSLSKHQRIH    575  

PF00096.16.fs: domain 7 of 13, from 553 to 575: score 35.2, E = 1.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  CgksFs++s+L +H+r+H   
    KIAA1962   553    YTCS-NCGKSFSHSSSLSKHQRIH    575  

PF00096.16.fs: domain 8 of 13, from 581 to 603: score 34.2, E = 2.8e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC  +Cgk+F+++s L+rH+r+H   
    KIAA1962   581    YKCG-ECGKAFRQNSCLTRHQRIH    603  

PF00096.16.ls: domain 7 of 12, from 581 to 603: score 36.2, E = 1.1e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC  +Cgk+F+++s L+rH+r+H   
    KIAA1962   581    YKCG-ECGKAFRQNSCLTRHQRIH    603  

PF00096.16.ls: domain 8 of 12, from 609 to 631: score 22.2, E = 0.0018
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ dCg +Fs+  +   H+r H   
    KIAA1962   609    YLCN-DCGMTFSHFTSVIYHQRLH    631  

PF00096.16.ls: domain 9 of 12, from 637 to 659: score 33.2, E = 8.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C k+F ++s L rH+r+H   
    KIAA1962   637    YKCN-QCEKAFPTHSLLSRHQRIH    659  

PF00096.16.fs: domain 10 of 13, from 637 to 659: score 31.2, E = 1.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C k+F ++s L rH+r+H   
    KIAA1962   637    YKCN-QCEKAFPTHSLLSRHQRIH    659  

PF00096.16.ls: domain 10 of 12, from 665 to 687: score 36.5, E = 8.5e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +CgksFs++s+L+ H r+H   
    KIAA1962   665    YKCK-ECGKSFSQSSSLNEHHRIH    687  

PF00096.16.fs: domain 11 of 13, from 665 to 687: score 34.5, E = 2.3e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +CgksFs++s+L+ H r+H   
    KIAA1962   665    YKCK-ECGKSFSQSSSLNEHHRIH    687  

PF00096.16.fs: domain 12 of 13, from 693 to 715: score 26.4, E = 2.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg +Fsr+s L  Hl++H   
    KIAA1962   693    YECN-YCGATFSRSSILVEHLKIH    715  

PF00096.16.ls: domain 11 of 12, from 693 to 715: score 28.3, E = 2.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg +Fsr+s L  Hl++H   
    KIAA1962   693    YECN-YCGATFSRSSILVEHLKIH    715  

PF00096.16.fs: domain 13 of 13, from 721 to 743: score 27.5, E = 1.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C k+F+++s L rH+  H   
    KIAA1962   721    YECN-ECEKTFKSNSGLIRHRGFH    743  

PF00096.16.ls: domain 12 of 12, from 721 to 743: score 29.5, E = 1.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C k+F+++s L rH+  H   
    KIAA1962   721    YECN-ECEKTFKSNSGLIRHRGFH    743  

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