hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18144382/chunk_1/iprscan-20080502-18144382.nocrc
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Query sequence: KIAA1980
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07719.7.ls Tetratricopeptide repeat                        66.0    1.1e-16   3
PF00515.18.ls Tetratricopeptide repeat                        63.7    5.4e-16   3
PF00515.18.fs Tetratricopeptide repeat                        59.2    7.8e-16   4
PF07719.7.fs Tetratricopeptide repeat                        60.0    9.1e-16   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00515.18.ls   1/3     197   230 ..     1    34 []    19.0    0.016
PF00515.18.fs   2/4     197   230 ..     1    34 []    17.0   0.0008
PF07719.7.ls   1/3     197   230 ..     1    34 []    23.4  0.00076
PF00515.18.fs   3/4     231   264 ..     1    34 []    27.5    8e-07
PF00515.18.ls   2/3     231   264 ..     1    34 []    29.5  1.1e-05
PF07719.7.ls   2/3     231   264 ..     1    34 []    27.0  6.3e-05
PF00515.18.fs   4/4     272   305 ..     1    34 []    13.3    0.009
PF00515.18.ls   3/3     272   305 ..     1    34 []    15.3    0.075

Alignments of top-scoring domains:
PF00515.18.ls: domain 1 of 3, from 197 to 230: score 19.0, E = 0.016
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a  +  +G+ y+k g++ +A   y+kALe+d +n   
    KIAA1980   197    ALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQN    230  

PF00515.18.fs: domain 2 of 4, from 197 to 230: score 17.0, E = 0.0008
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a  +  +G+ y+k g++ +A   y+kALe+d +n   
    KIAA1980   197    ALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQN    230  

PF07719.7.ls: domain 1 of 3, from 197 to 230: score 23.4, E = 0.00076
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a  +  +G+ y+k g++ +A + y+kAle+d++n   
    KIAA1980   197    ALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQN    230  

PF00515.18.fs: domain 3 of 4, from 231 to 264: score 27.5, E = 8e-07
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      +ea+  +G++y  +g +++Aie++e ALe  P++   
    KIAA1980   231    VEALVARGALYATKGSLNKAIEDFELALENCPTH    264  

PF00515.18.ls: domain 2 of 3, from 231 to 264: score 29.5, E = 1.1e-05
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      +ea+  +G++y  +g +++Aie++e ALe  P++   
    KIAA1980   231    VEALVARGALYATKGSLNKAIEDFELALENCPTH    264  

PF07719.7.ls: domain 2 of 3, from 231 to 264: score 27.0, E = 6.3e-05
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      +eal ++G +y+ +g + +A+e++e Ale  P++   
    KIAA1980   231    VEALVARGALYATKGSLNKAIEDFELALENCPTH    264  

PF00515.18.fs: domain 4 of 4, from 272 to 305: score 13.3, E = 0.009
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       +++  +G  +++ +k+  A+ +y+kAL+ld+++   
    KIAA1980   272    CQTLVERGGQLEEEEKFLNAESYYKKALALDETF    305  

PF00515.18.ls: domain 3 of 3, from 272 to 305: score 15.3, E = 0.075
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       +++  +G  +++ +k+  A+ +y+kAL+ld+++   
    KIAA1980   272    CQTLVERGGQLEEEEKFLNAESYYKKALALDETF    305  

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