hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18163344/chunk_1/iprscan-20080502-18163344.nocrc
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Query sequence: KIAA1981
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00023.20.ls Ankyrin repeat                                 148.2    2.1e-41   5
PF00023.20.fs Ankyrin repeat                                 138.2    2.1e-38   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.fs   1/5      72   104 ..     1    33 []    21.9  4.1e-05
PF00023.20.ls   1/5      72   104 ..     1    33 []    23.9  0.00055
PF00023.20.ls   2/5     105   137 ..     1    33 []    30.0  7.5e-06
PF00023.20.fs   2/5     105   137 ..     1    33 []    28.0  7.8e-07
PF00023.20.ls   3/5     138   170 ..     1    33 []    28.8  1.8e-05
PF00023.20.fs   3/5     138   170 ..     1    33 []    26.8  1.8e-06
PF00023.20.fs   4/5     171   203 ..     1    33 []    31.5  8.3e-08
PF00023.20.ls   4/5     171   203 ..     1    33 []    33.5  6.7e-07
PF00023.20.fs   5/5     204   236 ..     1    33 []    30.0  2.3e-07
PF00023.20.ls   5/5     204   236 ..     1    33 []    32.0    2e-06

Alignments of top-scoring domains:
PF00023.20.fs: domain 1 of 5, from 72 to 104: score 21.9, E = 4.1e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G ++ HlAa+rg +++++  + +G ++  +d    
    KIAA1981    72    EGKSAFHLAAMRGAASCLEVMIAHGSNVMSTDG    104  

PF00023.20.ls: domain 1 of 5, from 72 to 104: score 23.9, E = 0.00055
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G ++ HlAa+rg +++++  + +G ++  +d    
    KIAA1981    72    EGKSAFHLAAMRGAASCLEVMIAHGSNVMSTDG    104  

PF00023.20.ls: domain 2 of 5, from 105 to 137: score 30.0, E = 7.5e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+ +LHlAa++g+++++k Ll++ + ++++d    
    KIAA1981   105    AGYNALHLAAKYGHPQCLKQLLQASCVVDVVDS    137  

PF00023.20.fs: domain 2 of 5, from 105 to 137: score 28.0, E = 7.8e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+ +LHlAa++g+++++k Ll++ + ++++d    
    KIAA1981   105    AGYNALHLAAKYGHPQCLKQLLQASCVVDVVDS    137  

PF00023.20.ls: domain 3 of 5, from 138 to 170: score 28.8, E = 1.8e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH+Aa  g+l++ + L s  A ln qd+   
    KIAA1981   138    SGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDR    170  

PF00023.20.fs: domain 3 of 5, from 138 to 170: score 26.8, E = 1.8e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH+Aa  g+l++ + L s  A ln qd+   
    KIAA1981   138    SGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDR    170  

PF00023.20.fs: domain 4 of 5, from 171 to 203: score 31.5, E = 8.3e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G TPL +Aa++ ++++++lLl+qGA  n qd    
    KIAA1981   171    SGATPLIIAAQMCHTDLCRLLLQQGAAANDQDL    203  

PF00023.20.ls: domain 4 of 5, from 171 to 203: score 33.5, E = 6.7e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G TPL +Aa++ ++++++lLl+qGA  n qd    
    KIAA1981   171    SGATPLIIAAQMCHTDLCRLLLQQGAAANDQDL    203  

PF00023.20.fs: domain 5 of 5, from 204 to 236: score 30.0, E = 2.3e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L+lA++  ++e v+ Ll+ GA + ++d    
    KIAA1981   204    QGRTALMLACEGASPETVEVLLQGGAQPGITDA    236  

PF00023.20.ls: domain 5 of 5, from 204 to 236: score 32.0, E = 2e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L+lA++  ++e v+ Ll+ GA + ++d    
    KIAA1981   204    QGRTALMLACEGASPETVEVLLQGGAQPGITDA    236  

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