hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18163344/chunk_1/iprscan-20080502-18163344.nocrc
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Query sequence: KIAA1981
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 115.9    4.5e-30   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/5      72   101 ..     1    30 []    24.1    0.019
SM00248    2/5     105   134 ..     1    30 []    29.2  0.00056
SM00248    3/5     138   169 ..     1    30 []    16.1      5.1
SM00248    4/5     171   200 ..     1    30 []    22.0    0.086
SM00248    5/5     204   233 ..     1    30 []    24.6    0.014

Alignments of top-scoring domains:
SM00248: domain 1 of 5, from 72 to 101: score 24.1, E = 0.019
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G++++HlAa++g  ++++ ++ +g ++     
    KIAA1981    72    EGKSAFHLAAMRGAASCLEVMIAHGSNVMS    101  

SM00248: domain 2 of 5, from 105 to 134: score 29.2, E = 0.00056
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+++LHlAa++g++ ++k Ll+++  +++   
    KIAA1981   105    AGYNALHLAAKYGHPQCLKQLLQASCVVDV    134  

SM00248: domain 3 of 5, from 138 to 169: score 16.1, E = 5.1
                   *->dGrTpLHlAaengnlevvklLldkga..dina<-*
                       G+T+LH+Aa+ g l++ + L + +a+ ++ +   
    KIAA1981   138    SGWTALHHAAAGGCLSCSEVLCSFKAhlNPQD    169  

SM00248: domain 4 of 5, from 171 to 200: score 22.0, E = 0.086
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G TpL +Aa+  + ++++lLl+ ga  n+   
    KIAA1981   171    SGATPLIIAAQMCHTDLCRLLLQQGAAAND    200  

SM00248: domain 5 of 5, from 204 to 233: score 24.6, E = 0.014
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +GrT+L+lA+e  ++e+v+ Ll+ ga + +   
    KIAA1981   204    QGRTALMLACEGASPETVEVLLQGGAQPGI    233  

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