hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18181925/chunk_1/iprscan-20080502-18181925.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1982 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 574.5 9.2e-170 18 PF00096.16.fs Zinc finger, C2H2 type 556.6 2.4e-164 19 PF01096.9.fs Transcription factor S-II (TFIIS) 118.2 6.6e-36 18 PF01286.9.fs XPA protein N-terminal 99.8 1e-27 18 PF07754.2.fs Domain of unknown function (DUF1610) 61.1 2.2e-15 18 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 33.0 7.4e-10 17 PF08790.1.fs LYAR-type C2HC zinc finger 35.8 1.3e-09 9 PF08792.1.fs A2L zinc ribbon domain 20.8 0.00016 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/19 9 31 .. 1 24 [] 33.4 4.5e-07 PF00096.16.ls 1/18 9 31 .. 1 24 [] 35.4 1.9e-07 PF00096.16.fs 2/19 37 59 .. 1 24 [] 29.9 3.4e-06 PF00096.16.ls 2/18 37 59 .. 1 24 [] 31.8 2.2e-06 PF00096.16.fs 3/19 65 87 .. 1 24 [] 35.2 1.6e-07 PF00096.16.ls 3/18 65 87 .. 1 24 [] 37.1 5.5e-08 PF00096.16.fs 4/19 121 143 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 4/18 121 143 .. 1 24 [] 29.8 8.9e-06 PF00096.16.fs 5/19 149 171 .. 1 24 [] 27.6 1.3e-05 PF00096.16.ls 5/18 149 171 .. 1 24 [] 29.5 1.1e-05 PF00096.16.ls 6/18 177 199 .. 1 24 [] 34.0 4.8e-07 PF00096.16.fs 6/19 177 199 .. 1 24 [] 32.0 9.9e-07 PF00096.16.fs 7/19 205 227 .. 1 24 [] 25.4 4.4e-05 PF00096.16.ls 7/18 205 227 .. 1 24 [] 27.4 4.8e-05 PF00096.16.ls 8/18 233 255 .. 1 24 [] 36.6 7.9e-08 PF00096.16.fs 8/19 233 255 .. 1 24 [] 34.6 2.2e-07 PF00096.16.ls 9/18 261 283 .. 1 24 [] 31.6 2.6e-06 PF00096.16.fs 9/19 261 283 .. 1 24 [] 29.6 4e-06 PF00096.16.ls 11/18 345 367 .. 1 24 [] 28.8 1.7e-05 PF00096.16.fs 12/19 345 367 .. 1 24 [] 26.9 1.9e-05 PF00096.16.ls 12/18 373 395 .. 1 24 [] 38.0 3e-08 PF00096.16.fs 13/19 373 395 .. 1 24 [] 36.0 1e-07 PF00096.16.fs 14/19 429 451 .. 1 24 [] 35.6 1.3e-07 PF00096.16.ls 13/18 429 451 .. 1 24 [] 37.6 4e-08 PF00096.16.ls 14/18 457 479 .. 1 24 [] 30.4 6e-06 PF00096.16.fs 15/19 457 479 .. 1 24 [] 28.4 7.9e-06 PF00096.16.ls 15/18 485 507 .. 1 24 [] 34.0 4.7e-07 PF00096.16.fs 16/19 485 507 .. 1 24 [] 32.1 9.6e-07 PF00096.16.ls 16/18 513 535 .. 1 24 [] 27.8 3.5e-05 PF00096.16.fs 17/19 513 535 .. 1 24 [] 25.9 3.4e-05 PF00096.16.fs 18/19 541 563 .. 1 24 [] 33.0 5.6e-07 PF00096.16.ls 17/18 541 563 .. 1 24 [] 35.0 2.5e-07 PF00096.16.fs 19/19 569 591 .. 1 24 [] 33.7 3.8e-07 PF00096.16.ls 18/18 569 591 .. 1 24 [] 35.7 1.5e-07 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 19, from 9 to 31: score 33.4, E = 4.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F++++nL H+r+H KIAA1982 9 YTCG-ECGKTFRQSANLYVHRRIH 31 PF00096.16.ls: domain 1 of 18, from 9 to 31: score 35.4, E = 1.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F++++nL H+r+H KIAA1982 9 YTCG-ECGKTFRQSANLYVHRRIH 31 PF00096.16.fs: domain 2 of 19, from 37 to 59: score 29.9, E = 3.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk+F r L++H+++H KIAA1982 37 YKCE-DCGKAFGRYTALNQHKKIH 59 PF00096.16.ls: domain 2 of 18, from 37 to 59: score 31.8, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk+F r L++H+++H KIAA1982 37 YKCE-DCGKAFGRYTALNQHKKIH 59 PF00096.16.fs: domain 3 of 19, from 65 to 87: score 35.2, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++ nL++H+r+H KIAA1982 65 YKCE-ECGKAFNSSTNLTAHKRIH 87 PF00096.16.ls: domain 3 of 18, from 65 to 87: score 37.1, E = 5.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++ nL++H+r+H KIAA1982 65 YKCE-ECGKAFNSSTNLTAHKRIH 87 PF00096.16.fs: domain 4 of 19, from 121 to 143: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++ +L++H ++H KIAA1982 121 YKCK-ECGKAFIHSLHLNKHEKIH 143 PF00096.16.ls: domain 4 of 18, from 121 to 143: score 29.8, E = 8.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++ +L++H ++H KIAA1982 121 YKCK-ECGKAFIHSLHLNKHEKIH 143 PF00096.16.fs: domain 5 of 19, from 149 to 171: score 27.6, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+ +++s++ +H+r+H KIAA1982 149 YKCK-QCGKVITSSSSFAKHKRIH 171 PF00096.16.ls: domain 5 of 18, from 149 to 171: score 29.5, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+ +++s++ +H+r+H KIAA1982 149 YKCK-QCGKVITSSSSFAKHKRIH 171 PF00096.16.ls: domain 6 of 18, from 177 to 199: score 34.0, E = 4.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F+++ +L++H+r+H KIAA1982 177 FECL-ECGKAFTSSTTLTKHRRIH 199 PF00096.16.fs: domain 6 of 19, from 177 to 199: score 32.0, E = 9.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F+++ +L++H+r+H KIAA1982 177 FECL-ECGKAFTSSTTLTKHRRIH 199 PF00096.16.fs: domain 7 of 19, from 205 to 227: score 25.4, E = 4.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++++ L H+r+H KIAA1982 205 YTCE-VCGKAFRQSAILYVHRRIH 227 PF00096.16.ls: domain 7 of 18, from 205 to 227: score 27.4, E = 4.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++++ L H+r+H KIAA1982 205 YTCE-VCGKAFRQSAILYVHRRIH 227 PF00096.16.ls: domain 8 of 18, from 233 to 255: score 36.6, E = 7.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++++nL H+r+H KIAA1982 233 YTCE-ECGKTFRQSANLYVHRRIH 255 PF00096.16.fs: domain 8 of 19, from 233 to 255: score 34.6, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++++nL H+r+H KIAA1982 233 YTCE-ECGKTFRQSANLYVHRRIH 255 PF00096.16.ls: domain 9 of 18, from 261 to 283: score 31.6, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F r +L++H+++H KIAA1982 261 YKCE-ECGKAFGRYTDLNQHKKIH 283 PF00096.16.fs: domain 9 of 19, from 261 to 283: score 29.6, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F r +L++H+++H KIAA1982 261 YKCE-ECGKAFGRYTDLNQHKKIH 283 PF00096.16.ls: domain 11 of 18, from 345 to 367: score 28.8, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + L++H+++H KIAA1982 345 YKCE-ECGKAFGWSIALNQHKKIH 367 PF00096.16.fs: domain 12 of 19, from 345 to 367: score 26.9, E = 1.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + L++H+++H KIAA1982 345 YKCE-ECGKAFGWSIALNQHKKIH 367 PF00096.16.ls: domain 12 of 18, from 373 to 395: score 38.0, E = 3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr+ nL++H+r+H KIAA1982 373 YKCE-ECGKAFSRSRNLTTHRRVH 395 PF00096.16.fs: domain 13 of 19, from 373 to 395: score 36.0, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr+ nL++H+r+H KIAA1982 373 YKCE-ECGKAFSRSRNLTTHRRVH 395 PF00096.16.fs: domain 14 of 19, from 429 to 451: score 35.6, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L+rH ++H KIAA1982 429 YKCK-ECGKVFKQSSHLNRHEKIH 451 PF00096.16.ls: domain 13 of 18, from 429 to 451: score 37.6, E = 4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L+rH ++H KIAA1982 429 YKCK-ECGKVFKQSSHLNRHEKIH 451 PF00096.16.ls: domain 14 of 18, from 457 to 479: score 30.4, E = 6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+ +++s++ +H+r+H KIAA1982 457 YKCK-ECGKVITSSSSFAKHKRIH 479 PF00096.16.fs: domain 15 of 19, from 457 to 479: score 28.4, E = 7.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+ +++s++ +H+r+H KIAA1982 457 YKCK-ECGKVITSSSSFAKHKRIH 479 PF00096.16.ls: domain 15 of 18, from 485 to 507: score 34.0, E = 4.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk+F+++ +L++H+r+H KIAA1982 485 FKCL-ECGKAFTSSTTLTKHRRIH 507 PF00096.16.fs: domain 16 of 19, from 485 to 507: score 32.1, E = 9.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk+F+++ +L++H+r+H KIAA1982 485 FKCL-ECGKAFTSSTTLTKHRRIH 507 PF00096.16.ls: domain 16 of 18, from 513 to 535: score 27.8, E = 3.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++++ L H+r+H KIAA1982 513 YTCE-ECGKAFRQSAILYVHRRIH 535 PF00096.16.fs: domain 17 of 19, from 513 to 535: score 25.9, E = 3.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++++ L H+r+H KIAA1982 513 YTCE-ECGKAFRQSAILYVHRRIH 535 PF00096.16.fs: domain 18 of 19, from 541 to 563: score 33.0, E = 5.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F++++nL +H+++H KIAA1982 541 YTCG-ECGKTFRQSANLYAHKKIH 563 PF00096.16.ls: domain 17 of 18, from 541 to 563: score 35.0, E = 2.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F++++nL +H+++H KIAA1982 541 YTCG-ECGKTFRQSANLYAHKKIH 563 PF00096.16.fs: domain 19 of 19, from 569 to 591: score 33.7, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C dCgk+F++++nL +H+++H KIAA1982 569 YTCG-DCGKTFRQSANLYAHKKIH 591 PF00096.16.ls: domain 18 of 18, from 569 to 591: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C dCgk+F++++nL +H+++H KIAA1982 569 YTCG-DCGKTFRQSANLYAHKKIH 591 //