# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk09737mrp1.fasta.huge -Q ../query/KIAA1983.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1983, 418 aa
 vs ./tmplib.25089 library

1987087 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.3675+/- 0.011; mu= -9.9658+/- 0.747
 mean_var=483.7168+/-113.772, 0's: 0 Z-trim: 3  B-trim: 8 in 1/39
 Lambda= 0.058315

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1870  ( 832 res)   hh05136b                    ( 832)  294 38.9  0.0013
KIAA1510  ( 1140 res)   fg02934(revised)           (1140)  295 39.2  0.0015


>>KIAA1870  ( 832 res)   hh05136b                         (832 aa)
 initn: 349 init1: 195 opt: 294  Z-score: 156.5  bits: 38.9 E(): 0.0013
Smith-Waterman score: 324;  52.222% identity (64.444% similar) in 90 aa overlap (259-345:2-89)

      230       240       250       260       270       280        
KIAA19 QKIALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPP
                                     : ::.:::.: :: :::.: ::  : ::  
KIAA18                              GGHPGMPGGMGTPGEPGPQGPPGSRGPPGMR
                                            10        20        30 

      290       300       310          320       330       340     
KIAA19 GQPGPRGSMGPMGPSPDLSHIKQGRRGPVGP---PGAPGRDGSKGERGAPGPRGSPGPPG
       :  : ::  :: ::. . .  ..: .:: ::   :: ::..:  ::::  : :: :: ::
KIAA18 GAKGRRGPRGPDGPAGEQG--SRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPG
              40        50          60        70        80         

         350       360       370       380       390       400     
KIAA19 SFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRT
                                                                   
KIAA18 PSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPG
      90       100       110       120       130       140         

>>KIAA1510  ( 1140 res)   fg02934(revised)                (1140 aa)
 initn: 623 init1: 186 opt: 295  Z-score: 155.5  bits: 39.2 E(): 0.0015
Smith-Waterman score: 295;  51.685% identity (58.427% similar) in 89 aa overlap (261-349:921-1004)

              240       250       260       270       280       290
KIAA19 IALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQ
                                     :: :: ::::: :: .:.::  :.::: : 
KIAA15 DEDRCCELPASRDGETCPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRGP
              900       910       920       930       940       950

              300       310       320       330       340       350
KIAA19 PGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPGSFDFL
       :: .:  :  :  : :    ::. :  : ::  : .: :: ::  :  : :::::   : 
KIAA15 PGVKGEKGDHG-LPGL----QGHPGHQGIPGRVGLQGPKGMRGLEGTAGLPGPPGPRGFQ
              960            970       980       990      1000     

              360       370       380       390       400       410
KIAA19 LLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRTETRDL
                                                                   
KIAA15 GMAGARGTSGERGPPGTVGPTGLPGPKGERGEKGEPQSLATLYQLVSQACESAIQTHVSK
        1010      1020      1030      1040      1050      1060     




418 residues in 1 query   sequences
1987087 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:24:26 2008 done: Thu Dec 18 15:24:27 2008
 Total Scan time:  0.400 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]