# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fk09737mrp1.fasta.nr -Q ../query/KIAA1983.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1983, 418 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7790011 sequences Expectation_n fit: rho(ln(x))= 5.8245+/-0.000209; mu= 8.6458+/- 0.012 mean_var=134.9018+/-24.988, 0's: 28 Z-trim: 152 B-trim: 6 in 1/64 Lambda= 0.110425 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|114673422|ref|XP_512156.2| PREDICTED: collagen ( 754) 3024 493.3 7.7e-137 gi|109122348|ref|XP_001090495.1| PREDICTED: simila ( 655) 3000 489.4 1e-135 gi|74738220|sp|Q6UXH8.1|CCBE1_HUMAN RecName: Full= ( 406) 2959 482.6 6.8e-134 gi|148677723|gb|EDL09670.1| collagen and calcium b ( 435) 2734 446.8 4.4e-123 gi|148677724|gb|EDL09671.1| collagen and calcium b ( 441) 2734 446.8 4.4e-123 gi|26330464|dbj|BAC28962.1| unnamed protein produc ( 408) 2699 441.2 2e-121 gi|26390553|dbj|BAC25916.1| unnamed protein produc ( 408) 2693 440.3 3.9e-121 gi|123780779|sp|Q3MI99.1|CCBE1_MOUSE RecName: Full ( 408) 2685 439.0 9.4e-121 gi|149064505|gb|EDM14708.1| rCG46976, isoform CRA_ ( 464) 2675 437.5 3.1e-120 gi|109507481|ref|XP_001065428.1| PREDICTED: simila ( 568) 2675 437.6 3.5e-120 gi|149064504|gb|EDM14707.1| rCG46976, isoform CRA_ ( 408) 2669 436.5 5.5e-120 gi|73945928|ref|XP_852585.1| PREDICTED: similar to ( 393) 2306 378.6 1.4e-102 gi|194034601|ref|XP_001925807.1| PREDICTED: simila ( 349) 2295 376.8 4.3e-102 gi|109506721|ref|XP_341625.3| PREDICTED: similar t ( 399) 2247 369.2 9.4e-100 gi|148677721|gb|EDL09668.1| collagen and calcium b ( 321) 1981 326.7 4.6e-87 gi|189530311|ref|XP_001923108.1| PREDICTED: hypoth ( 401) 1896 313.3 6.4e-83 gi|159155668|gb|AAI54644.1| LOC555629 protein [Dan ( 418) 1896 313.3 6.6e-83 gi|28302161|gb|AAH46645.1| CCBE1 protein [Homo sap ( 215) 1557 259.0 7.7e-67 gi|47219888|emb|CAF97158.1| unnamed protein produc ( 320) 1548 257.7 2.7e-66 gi|26352668|dbj|BAC39964.1| unnamed protein produc ( 243) 1455 242.8 6.5e-62 gi|149543673|ref|XP_001517255.1| PREDICTED: hypoth ( 227) 1379 230.6 2.8e-58 gi|47220921|emb|CAG03128.1| unnamed protein produc ( 306) 1288 216.3 7.7e-54 gi|149064503|gb|EDM14706.1| rCG46976, isoform CRA_ ( 240) 1208 203.4 4.5e-50 gi|34365093|emb|CAE45902.1| hypothetical protein [ ( 135) 732 127.3 2.1e-27 gi|91076498|ref|XP_973054.1| PREDICTED: similar to ( 809) 626 111.3 8.1e-22 gi|148677720|gb|EDL09667.1| collagen and calcium b ( 126) 475 86.3 4.3e-15 gi|109506672|ref|XP_225862.4| PREDICTED: similar t ( 78) 425 78.1 7.8e-13 gi|210124318|gb|EEA72015.1| hypothetical protein B ( 274) 384 72.2 1.6e-10 gi|164372211|gb|ABY51978.1| nb001 [Hydra magnipapi ( 165) 363 68.6 1.2e-09 gi|221122118|ref|XP_002158575.1| PREDICTED: hypoth ( 177) 363 68.7 1.2e-09 gi|168196766|gb|ACA18713.1| Collagen triple helix ( 344) 364 69.2 1.7e-09 gi|88174614|gb|ABD39382.1| putative galectin prote ( 290) 362 68.8 1.9e-09 gi|210097468|gb|EEA45595.1| hypothetical protein B ( 301) 361 68.6 2.2e-09 gi|210112707|gb|EEA60482.1| hypothetical protein B ( 450) 363 69.1 2.3e-09 gi|7378657|emb|CAB85466.1| putative cuticular coll ( 280) 359 68.3 2.6e-09 gi|62666698|ref|XP_343779.2| PREDICTED: similar to (1691) 369 70.8 2.7e-09 gi|158602500|gb|EDP38915.1| Nematode cuticle colla ( 283) 358 68.1 2.9e-09 gi|2746786|gb|AAB94952.1| Collagen protein 68 [Cae ( 329) 358 68.2 3.2e-09 gi|48994844|gb|AAT48109.1| mutant collagen alpha 1 ( 491) 356 68.1 5.2e-09 gi|148682812|gb|EDL14759.1| procollagen, type IV, ( 842) 359 68.8 5.3e-09 gi|149030137|gb|EDL85214.1| collagen, type IV, alp ( 842) 358 68.7 5.9e-09 gi|209484159|gb|ACI47556.1| collagen type VIII alp ( 711) 357 68.4 5.9e-09 gi|169154444|emb|CAQ14993.1| novel protein similar ( 711) 357 68.4 5.9e-09 gi|187029823|emb|CAP31033.1| C. briggsae CBR-COL-5 ( 359) 352 67.3 6.6e-09 gi|211610|gb|AAA48703.1| novel collagen protein (1146) 358 68.8 7.2e-09 gi|74004974|ref|XP_535998.2| PREDICTED: similar to (1480) 357 68.8 9.5e-09 gi|221120662|ref|XP_002157522.1| PREDICTED: simila ( 177) 344 65.6 1e-08 gi|210120478|gb|EEA68197.1| hypothetical protein B (1294) 355 68.4 1.1e-08 gi|158602864|gb|EDP39079.1| Nematode cuticle colla ( 301) 346 66.2 1.1e-08 gi|118093225|ref|XP_421846.2| PREDICTED: similar t (1527) 355 68.5 1.2e-08 >>gi|114673422|ref|XP_512156.2| PREDICTED: collagen and (754 aa) initn: 3024 init1: 3024 opt: 3024 Z-score: 2612.9 bits: 493.3 E(): 7.7e-137 Smith-Waterman score: 3024; 99.522% identity (100.000% similar) in 418 aa overlap (1-418:337-754) 10 20 30 KIAA19 ELGAGKKPGASLMVPPPPSRGGAARGQLGR :::::::::::::::::::::::::::::: gi|114 WCKRPCSPAPPAGKREGGGGRGGAGRLVRTELGAGKKPGASLMVPPPPSRGGAARGQLGR 310 320 330 340 350 360 40 50 60 70 80 90 KIAA19 SLGPLLLLLALGHTWTYREEPEDGDREICSESKIATTKYPCLKSSGELTTCYRKKCCKGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SLGPLLLLLALGHTWTYREEPEDGDREICSESKIATTKYPCLKSSGELTTCYRKKCCKGY 370 380 390 400 410 420 100 110 120 130 140 150 KIAA19 KFVLGQCIPEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYDRERHRKREKPYCLDIDEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KFVLGQCIPEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYDRERHRKREKPYCLDIDEC 430 440 450 460 470 480 160 170 180 190 200 210 KIAA19 ASSNGTLCAHICINTLGSYRCECREGYIREDDGKTCTRGDKYPNDTGHEKSENMVKAGTC ::::::::::::::::::::::::::::.::::::::::::::::::::::::.:::::: gi|114 ASSNGTLCAHICINTLGSYRCECREGYIQEDDGKTCTRGDKYPNDTGHEKSENVVKAGTC 490 500 510 520 530 540 220 230 240 250 260 270 KIAA19 CATCKEFYQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 CATCKEFYQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPP 550 560 570 580 590 600 280 290 300 310 320 330 KIAA19 GSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKG 610 620 630 640 650 660 340 350 360 370 380 390 KIAA19 ERGAPGPRGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ERGAPGPRGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYP 670 680 690 700 710 720 400 410 KIAA19 EAMDLGSGDDHPRRTETRDLRAPRDFYP :::::::::::::::::::::::::::: gi|114 EAMDLGSGDDHPRRTETRDLRAPRDFYP 730 740 750 >>gi|109122348|ref|XP_001090495.1| PREDICTED: similar to (655 aa) initn: 3000 init1: 3000 opt: 3000 Z-score: 2593.0 bits: 489.4 E(): 1e-135 Smith-Waterman score: 3000; 98.325% identity (99.522% similar) in 418 aa overlap (1-418:238-655) 10 20 30 KIAA19 ELGAGKKPGASLMVPPPPSRGGAARGQLGR :::.:::::::::::::::::::::::::: gi|109 RWCKRPCSPAPPAGKREGGGRGGAGRGAGTELGSGKKPGASLMVPPPPSRGGAARGQLGR 210 220 230 240 250 260 40 50 60 70 80 90 KIAA19 SLGPLLLLLALGHTWTYREEPEDGDREICSESKIATTKYPCLKSSGELTTCYRKKCCKGY ::::::::::::::::::::::::::::::::::::::::::: .::::::::::::::: gi|109 SLGPLLLLLALGHTWTYREEPEDGDREICSESKIATTKYPCLKPTGELTTCYRKKCCKGY 270 280 290 300 310 320 100 110 120 130 140 150 KIAA19 KFVLGQCIPEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYDRERHRKREKPYCLDIDEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KFVLGQCIPEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYDRERHRKREKPYCLDIDEC 330 340 350 360 370 380 160 170 180 190 200 210 KIAA19 ASSNGTLCAHICINTLGSYRCECREGYIREDDGKTCTRGDKYPNDTGHEKSENMVKAGTC ::::::::::::::::::::::::::::.::::::::.::::::::::::::: :::::: gi|109 ASSNGTLCAHICINTLGSYRCECREGYIQEDDGKTCTKGDKYPNDTGHEKSENAVKAGTC 390 400 410 420 430 440 220 230 240 250 260 270 KIAA19 CATCKEFYQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPP ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|109 CATCKEFYQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLASNAYLPGPPGLPGGQGPP 450 460 470 480 490 500 280 290 300 310 320 330 KIAA19 GSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKG 510 520 530 540 550 560 340 350 360 370 380 390 KIAA19 ERGAPGPRGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ERGAPGPRGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYP 570 580 590 600 610 620 400 410 KIAA19 EAMDLGSGDDHPRRTETRDLRAPRDFYP :::::::::::::::::::::::::::: gi|109 EAMDLGSGDDHPRRTETRDLRAPRDFYP 630 640 650 >>gi|74738220|sp|Q6UXH8.1|CCBE1_HUMAN RecName: Full=Coll (406 aa) initn: 2959 init1: 2959 opt: 2959 Z-score: 2560.1 bits: 482.6 E(): 6.8e-134 Smith-Waterman score: 2959; 100.000% identity (100.000% similar) in 406 aa overlap (13-418:1-406) 10 20 30 40 50 60 KIAA19 ELGAGKKPGASLMVPPPPSRGGAARGQLGRSLGPLLLLLALGHTWTYREEPEDGDREICS :::::::::::::::::::::::::::::::::::::::::::::::: gi|747 MVPPPPSRGGAARGQLGRSLGPLLLLLALGHTWTYREEPEDGDREICS 10 20 30 40 70 80 90 100 110 120 KIAA19 ESKIATTKYPCLKSSGELTTCYRKKCCKGYKFVLGQCIPEDYDVCAEAPCEQQCTDNFGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 ESKIATTKYPCLKSSGELTTCYRKKCCKGYKFVLGQCIPEDYDVCAEAPCEQQCTDNFGR 50 60 70 80 90 100 130 140 150 160 170 180 KIAA19 VLCTCYPGYRYDRERHRKREKPYCLDIDECASSNGTLCAHICINTLGSYRCECREGYIRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 VLCTCYPGYRYDRERHRKREKPYCLDIDECASSNGTLCAHICINTLGSYRCECREGYIRE 110 120 130 140 150 160 190 200 210 220 230 240 KIAA19 DDGKTCTRGDKYPNDTGHEKSENMVKAGTCCATCKEFYQMKQTVLQLKQKIALLPNNAAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 DDGKTCTRGDKYPNDTGHEKSENMVKAGTCCATCKEFYQMKQTVLQLKQKIALLPNNAAD 170 180 190 200 210 220 250 260 270 280 290 300 KIAA19 LGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 LGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPM 230 240 250 260 270 280 310 320 330 340 350 360 KIAA19 GPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIRND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 GPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIRND 290 300 310 320 330 340 370 380 390 400 410 KIAA19 ITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRTETRDLRAPRDFYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 ITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRTETRDLRAPRDFYP 350 360 370 380 390 400 >>gi|148677723|gb|EDL09670.1| collagen and calcium bindi (435 aa) initn: 1515 init1: 1444 opt: 2734 Z-score: 2366.0 bits: 446.8 E(): 4.4e-123 Smith-Waterman score: 2734; 89.234% identity (96.172% similar) in 418 aa overlap (3-418:18-435) 10 20 30 40 KIAA19 ELGAGKKPGASLMVPPP-PSRGGAARGQLGRSLGPLLLLLALGHT :: ::: :: ::::: :::::::. :::.:::::::::::::: gi|148 GGCGRGASLGTAQGESSGAEKKPRASPMVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHT 10 20 30 40 50 60 50 60 70 80 90 100 KIAA19 WTYREEPEDGDREICSESKIATTKYPCLKSSGELTTCYRKKCCKGYKFVLGQCIPEDYDV ::::::::: :::.:::.::.::::::::::::::::.:::::::::::::::::::::. gi|148 WTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCIPEDYDI 70 80 90 100 110 120 110 120 130 140 150 160 KIAA19 CAEAPCEQQCTDNFGRVLCTCYPGYRYDRERHRKREKPYCLDIDECASSNGTLCAHICIN ::.:::::::::::::::::::::::::::::.:::.::::::::::.:: ::::::::: gi|148 CAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICIN 130 140 150 160 170 180 170 180 190 200 210 220 KIAA19 TLGSYRCECREGYIREDDGKTCTRGDKYPNDTGHE-KSENMVKAGTCCATCKEFYQMKQT :.:::.:::::::: ::::.::::::::::::::: :::: ::::::::::::: ::::: gi|148 TMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQT 190 200 210 220 230 240 230 240 250 260 270 280 KIAA19 VLQLKQKIALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPG :::::::.::::::::.::::..::::::::.:::::::::::::::::::::::::::: gi|148 VLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPG 250 260 270 280 290 300 290 300 310 320 330 340 KIAA19 MPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGPRGSPGP :::::::::::::::::::::::::::::::::::::::::: ::::::::::: ::::: gi|148 MPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGP 310 320 330 340 350 360 350 360 370 380 390 400 KIAA19 PGSFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGSGDDHPR :::::::::.::::::::.::::::::::::::::.::::::: ::::..:.:::::. : gi|148 PGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSR 370 380 390 400 410 420 410 KIAA19 RTETRDLRAPRDFYP :::.:: .:::.::: gi|148 RTEARDPEAPRNFYP 430 >>gi|148677724|gb|EDL09671.1| collagen and calcium bindi (441 aa) initn: 1515 init1: 1444 opt: 2734 Z-score: 2365.9 bits: 446.8 E(): 4.4e-123 Smith-Waterman score: 2734; 89.234% identity (96.172% similar) in 418 aa overlap (3-418:24-441) 10 20 30 KIAA19 ELGAGKKPGASLMVPPP-PSRGGAARGQLGRSLGPLLLL :: ::: :: ::::: :::::::. :::.:::::::: gi|148 MGNTAKWRTERNKHTIFSKGESSGAEKKPRASPMVPPPLPSRGGAAKRQLGKSLGPLLLL 10 20 30 40 50 60 40 50 60 70 80 90 KIAA19 LALGHTWTYREEPEDGDREICSESKIATTKYPCLKSSGELTTCYRKKCCKGYKFVLGQCI ::::::::::::::: :::.:::.::.::::::::::::::::.:::::::::::::::: gi|148 LALGHTWTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCI 70 80 90 100 110 120 100 110 120 130 140 150 KIAA19 PEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYDRERHRKREKPYCLDIDECASSNGTLC :::::.::.:::::::::::::::::::::::::::::.:::.::::::::::.:: ::: gi|148 PEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLC 130 140 150 160 170 180 160 170 180 190 200 210 KIAA19 AHICINTLGSYRCECREGYIREDDGKTCTRGDKYPNDTGHE-KSENMVKAGTCCATCKEF :::::::.:::.:::::::: ::::.::::::::::::::: :::: ::::::::::::: gi|148 AHICINTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEF 190 200 210 220 230 240 220 230 240 250 260 270 KIAA19 YQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKG ::::::::::::.::::::::.::::..::::::::.:::::::::::::::::::::: gi|148 SQMKQTVLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKG 250 260 270 280 290 300 280 290 300 310 320 330 KIAA19 SPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGP :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|148 SPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGP 310 320 330 340 350 360 340 350 360 370 380 390 KIAA19 RGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGS ::::::::::::::.::::::::.::::::::::::::::.::::::: ::::..:.:: gi|148 PGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGS 370 380 390 400 410 420 400 410 KIAA19 GDDHPRRTETRDLRAPRDFYP :::. ::::.:: .:::.::: gi|148 GDDYSRRTEARDPEAPRNFYP 430 440 >>gi|26330464|dbj|BAC28962.1| unnamed protein product [M (408 aa) initn: 1513 init1: 1444 opt: 2699 Z-score: 2336.2 bits: 441.2 E(): 2e-121 Smith-Waterman score: 2699; 89.706% identity (96.814% similar) in 408 aa overlap (13-418:1-408) 10 20 30 40 50 KIAA19 ELGAGKKPGASLMVPPP-PSRGGAARGQLGRSLGPLLLLLALGHTWTYREEPEDGDREIC ::::: :::::::. :::.::::::::::::::::::::::: :::.: gi|263 MVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPEDRDREVC 10 20 30 40 60 70 80 90 100 110 KIAA19 SESKIATTKYPCLKSSGELTTCYRKKCCKGYKFVLGQCIPEDYDVCAEAPCEQQCTDNFG ::.::.::::::::::::::::.:::::::::::::::::::::.::.:::::::::::: gi|263 SENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCIPEDYDICAQAPCEQQCTDNFG 50 60 70 80 90 100 120 130 140 150 160 170 KIAA19 RVLCTCYPGYRYDRERHRKREKPYCLDIDECASSNGTLCAHICINTLGSYRCECREGYIR :::::::::::::::::.:::.::::::::::.:: ::::::::::.:::.:::::::: gi|263 RVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICINTMGSYHCECREGYIL 110 120 130 140 150 160 180 190 200 210 220 230 KIAA19 EDDGKTCTRGDKYPNDTGHE-KSENMVKAGTCCATCKEFYQMKQTVLQLKQKIALLPNNA ::::.::::::::::::::: :::: ::::::::::::: ::::::::::::.::::::: gi|263 EDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKMALLPNNA 170 180 190 200 210 220 240 250 260 270 280 290 KIAA19 ADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMG :.::::..::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|263 AELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMG 230 240 250 260 270 280 300 310 320 330 340 350 KIAA19 PMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIR ::::::::::::::::::::::::::: ::::::::::: ::::::::::::::.::::: gi|263 PMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLLLVLADIR 290 300 310 320 330 340 360 370 380 390 400 410 KIAA19 NDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRTETRDLRAPRDFYP :::.::::::::::::::::.::::::: ::::..:.:::::. ::::.:: .:::.::: gi|263 NDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPEAPRNFYP 350 360 370 380 390 400 >>gi|26390553|dbj|BAC25916.1| unnamed protein product [M (408 aa) initn: 1515 init1: 1438 opt: 2693 Z-score: 2331.0 bits: 440.3 E(): 3.9e-121 Smith-Waterman score: 2693; 89.461% identity (96.814% similar) in 408 aa overlap (13-418:1-408) 10 20 30 40 50 KIAA19 ELGAGKKPGASLMVPPP-PSRGGAARGQLGRSLGPLLLLLALGHTWTYREEPEDGDREIC ::::: :::::::. :::.::::::::::::::::::::::: :::.: gi|263 MVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPEDRDREVC 10 20 30 40 60 70 80 90 100 110 KIAA19 SESKIATTKYPCLKSSGELTTCYRKKCCKGYKFVLGQCIPEDYDVCAEAPCEQQCTDNFG ::.::.::::::::::::::::.:::::::::::::::::::::.::.:::::::::::: gi|263 SENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCIPEDYDICAQAPCEQQCTDNFG 50 60 70 80 90 100 120 130 140 150 160 170 KIAA19 RVLCTCYPGYRYDRERHRKREKPYCLDIDECASSNGTLCAHICINTLGSYRCECREGYIR :::::::::::::::::.:::.::::::::::.:: ::::::::::.:::.:::::::: gi|263 RVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICINTMGSYHCECREGYIL 110 120 130 140 150 160 180 190 200 210 220 230 KIAA19 EDDGKTCTRGDKYPNDTGHE-KSENMVKAGTCCATCKEFYQMKQTVLQLKQKIALLPNNA ::::.::::::::::::::: :::: ::::::::::::: ::::::::::::.::::::: gi|263 EDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKMALLPNNA 170 180 190 200 210 220 240 250 260 270 280 290 KIAA19 ADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMG :.::::..::::::::.::::::::::::::::::::::::::::::::::::::.:::: gi|263 AELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPQGSMG 230 240 250 260 270 280 300 310 320 330 340 350 KIAA19 PMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIR ::::::::::::::::::::::::::: ::::::::::: ::::::::::::::.::::: gi|263 PMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLLLVLADIR 290 300 310 320 330 340 360 370 380 390 400 410 KIAA19 NDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRTETRDLRAPRDFYP :::.::::::::::::::::.::::::: ::::..:.:::::. ::::.:: .:::.::: gi|263 NDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPEAPRNFYP 350 360 370 380 390 400 >>gi|123780779|sp|Q3MI99.1|CCBE1_MOUSE RecName: Full=Col (408 aa) initn: 1517 init1: 1430 opt: 2685 Z-score: 2324.1 bits: 439.0 E(): 9.4e-121 Smith-Waterman score: 2685; 89.461% identity (96.569% similar) in 408 aa overlap (13-418:1-408) 10 20 30 40 50 KIAA19 ELGAGKKPGASLMVPPP-PSRGGAARGQLGRSLGPLLLLLALGHTWTYREEPEDGDREIC ::::: :::::::. :::.::::::::::::::::::::::: :::.: gi|123 MVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPEDRDREVC 10 20 30 40 60 70 80 90 100 110 KIAA19 SESKIATTKYPCLKSSGELTTCYRKKCCKGYKFVLGQCIPEDYDVCAEAPCEQQCTDNFG ::.::.::::::::::::::::.:::::::::::::::::::::.::.:::::::::::: gi|123 SENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCIPEDYDICAQAPCEQQCTDNFG 50 60 70 80 90 100 120 130 140 150 160 170 KIAA19 RVLCTCYPGYRYDRERHRKREKPYCLDIDECASSNGTLCAHICINTLGSYRCECREGYIR :::::::::::::::::.:::.::::::::::.:: ::::::::::.:::.:::::::: gi|123 RVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICINTMGSYHCECREGYIL 110 120 130 140 150 160 180 190 200 210 220 230 KIAA19 EDDGKTCTRGDKYPNDTGHE-KSENMVKAGTCCATCKEFYQMKQTVLQLKQKIALLPNNA ::::.::::::::::::::: :::: ::::::::::::: ::::::::::::.::::::: gi|123 EDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKMALLPNNA 170 180 190 200 210 220 240 250 260 270 280 290 KIAA19 ADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMG :.::::..::::::::.::::::::::::::::::::::::::::::: ::::::::::: gi|123 AELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGLPGQPGPRGSMG 230 240 250 260 270 280 300 310 320 330 340 350 KIAA19 PMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIR ::::::::::::::::::::::::::: ::::::::::: ::::::::::::::.::::: gi|123 PMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLLLVLADIR 290 300 310 320 330 340 360 370 380 390 400 410 KIAA19 NDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRTETRDLRAPRDFYP :::.::::::::::::::::.::::::: ::::..:.:::::. ::::.:: .:::.::: gi|123 NDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPEAPRNFYP 350 360 370 380 390 400 >>gi|149064505|gb|EDM14708.1| rCG46976, isoform CRA_c [R (464 aa) initn: 1532 init1: 1435 opt: 2675 Z-score: 2314.9 bits: 437.5 E(): 3.1e-120 Smith-Waterman score: 2675; 88.321% identity (95.864% similar) in 411 aa overlap (10-418:54-464) 10 20 30 KIAA19 ELGAGKKPGASLMVPPPP-SRGGAARGQLGRSLGPLLLL :: :::: : :::::..::::.:::::::: gi|149 YGNTAKCVLKEASTQFSPRERARVPRRSRRASPMVPPLPLSRGGAVKGQLGKSLGPLLLL 30 40 50 60 70 80 40 50 60 70 80 90 KIAA19 LALGHTWTYREEPEDGDREICSESKIATTKYPCLKSSGELTTCYRKKCCKGYKFVLGQCI ::::::::.:::::: :::.:::.::.::::::::::::::::.:::::::::::::::: gi|149 LALGHTWTFREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCI 90 100 110 120 130 140 100 110 120 130 140 150 KIAA19 PEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYDRERHRKREKPYCLDIDECASSNGTLC :::::.::.:::::::::::::::::::::::::::::.::::::::::::::..: ::: gi|149 PEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKREKPYCLDIDECATGNTTLC 150 160 170 180 190 200 160 170 180 190 200 210 KIAA19 AHICINTLGSYRCECREGYIREDDGKTCTRGDKYPNDTGHE-KSENMVKAGTCCATCKEF :: :.::.:::.:::::::: ::::.::::::::::::::: :::: ::::::::::::: gi|149 AHTCVNTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEF 210 220 230 240 250 260 220 230 240 250 260 270 KIAA19 YQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKG :::::::::::::.:::::::.::::..::::::::::::::::::::::::::::::: gi|149 SQMKQTVLQLKQKISLLPNNAAELGKYVNGDKVLASNTYLPGPPGLPGGQGPPGSPGPKG 270 280 290 300 310 320 280 290 300 310 320 330 KIAA19 SPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGP :::::::::::::::::::::::::::::::::::::::::::::::: : ::::::::: gi|149 SPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGLKGERGAPGP 330 340 350 360 370 380 340 350 360 370 380 390 KIAA19 RGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGS ::::::::::::::.::::::::.:::::::::: :::::.::::::: ::::..:.:: gi|149 PGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRIHSSAEDFPLPQEFSSYPETLDFGS 390 400 410 420 430 440 400 410 KIAA19 GDDHPRRTETRDLRAPRDFYP :::. ::::.:: .:::.::: gi|149 GDDYSRRTEARDSEAPRNFYP 450 460 >>gi|109507481|ref|XP_001065428.1| PREDICTED: similar to (568 aa) initn: 1532 init1: 1435 opt: 2675 Z-score: 2313.9 bits: 437.6 E(): 3.5e-120 Smith-Waterman score: 2675; 88.321% identity (95.864% similar) in 411 aa overlap (10-418:158-568) 10 20 30 KIAA19 ELGAGKKPGASLMVPPPP-SRGGAARGQLGRSLGPLLLL :: :::: : :::::..::::.:::::::: gi|109 CWREGKAAAAAEPPRAQRRERARVPRRSRRASPMVPPLPLSRGGAVKGQLGKSLGPLLLL 130 140 150 160 170 180 40 50 60 70 80 90 KIAA19 LALGHTWTYREEPEDGDREICSESKIATTKYPCLKSSGELTTCYRKKCCKGYKFVLGQCI ::::::::.:::::: :::.:::.::.::::::::::::::::.:::::::::::::::: gi|109 LALGHTWTFREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCI 190 200 210 220 230 240 100 110 120 130 140 150 KIAA19 PEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYDRERHRKREKPYCLDIDECASSNGTLC :::::.::.:::::::::::::::::::::::::::::.::::::::::::::..: ::: gi|109 PEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKREKPYCLDIDECATGNTTLC 250 260 270 280 290 300 160 170 180 190 200 210 KIAA19 AHICINTLGSYRCECREGYIREDDGKTCTRGDKYPNDTGHE-KSENMVKAGTCCATCKEF :: :.::.:::.:::::::: ::::.::::::::::::::: :::: ::::::::::::: gi|109 AHTCVNTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEF 310 320 330 340 350 360 220 230 240 250 260 270 KIAA19 YQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKG :::::::::::::.:::::::.::::..::::::::::::::::::::::::::::::: gi|109 SQMKQTVLQLKQKISLLPNNAAELGKYVNGDKVLASNTYLPGPPGLPGGQGPPGSPGPKG 370 380 390 400 410 420 280 290 300 310 320 330 KIAA19 SPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGP :::::::::::::::::::::::::::::::::::::::::::::::: : ::::::::: gi|109 SPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGLKGERGAPGP 430 440 450 460 470 480 340 350 360 370 380 390 KIAA19 RGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGS ::::::::::::::.::::::::.:::::::::: :::::.::::::: ::::..:.:: gi|109 PGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRIHSSAEDFPLPQEFSSYPETLDFGS 490 500 510 520 530 540 400 410 KIAA19 GDDHPRRTETRDLRAPRDFYP :::. ::::.:: .:::.::: gi|109 GDDYSRRTEARDSEAPRNFYP 550 560 418 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Fri Mar 6 07:36:32 2009 done: Fri Mar 6 07:41:24 2009 Total Scan time: 1523.200 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]