hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18200075/chunk_1/iprscan-20080502-18200075.nocrc
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Query sequence: KIAA1983
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07645.6.fs Calcium binding EGF domain                      47.6    1.1e-13   1
PF01391.8.fs Collagen triple helix repeat (20 copies)        47.7    5.6e-12   2
PF07645.6.ls Calcium binding EGF domain                      49.3    1.2e-11   1
PF00008.17.fs EGF-like domain                                 43.8    2.2e-11   2
PF00008.17.ls EGF-like domain                                 43.7    5.9e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07645.6.fs   1/1     146   186 ..     1    55 []    47.6  1.1e-13
PF07645.6.ls   1/1     146   186 ..     1    55 []    49.3  1.2e-11
PF00008.17.fs   2/2     150   186 ..     1    38 []    32.1  4.2e-08
PF00008.17.ls   2/2     150   186 ..     1    38 []    34.1  4.6e-07
PF01391.8.fs   1/2     257   302 ..     1    47 [.    27.8  1.2e-06
PF01391.8.fs   2/2     312   345 ..     1    34 [.    20.0  0.00014

Alignments of top-scoring domains:
PF07645.6.fs: domain 1 of 1, from 146 to 186: score 47.6, E = 1.1e-13
                   *->DvDECad..gtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpv
                      D+DECa+++gt   C     + +C+Nt GS++C+    C+eGY    
    KIAA1983   146    DIDECASsnGT--LC-----AHICINTLGSYRCE----CREGYI--- 178  

                   sennedgtnC<-*
                       +dg++C   
    KIAA1983   179 --REDDGKTC    186  

PF07645.6.ls: domain 1 of 1, from 146 to 186: score 49.3, E = 1.2e-11
                   *->DvDECad..gtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpv
                      D+DECa+++gt   C     + +C+Nt GS++C+    C+eGY    
    KIAA1983   146    DIDECASsnGT--LC-----AHICINTLGSYRCE----CREGYI--- 178  

                   sennedgtnC<-*
                       +dg++C   
    KIAA1983   179 --REDDGKTC    186  

PF00008.17.fs: domain 2 of 2, from 150 to 186: score 32.1, E = 4.2e-08
                   *->Cspnn.gpCsngGtCvdtpggytCeCppGyfllytGkrC<-*
                      C++ n+  C +  +C++t g+y+CeC +Gy  + +Gk+C   
    KIAA1983   150    CASSNgTLCAH--ICINTLGSYRCECREGYIREDDGKTC    186  

PF00008.17.ls: domain 2 of 2, from 150 to 186: score 34.1, E = 4.6e-07
                   *->Cspnn.gpCsngGtCvdtpggytCeCppGyfllytGkrC<-*
                      C++ n+  C +  +C++t g+y+CeC +Gy  + +Gk+C   
    KIAA1983   150    CASSNgTLCAH--ICINTLGSYRCECREGYIREDDGKTC    186  

PF01391.8.fs: domain 1 of 2, from 257 to 302: score 27.8, E = 1.2e-06
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                        pGppG pG +GppG pGp+G +G+pG+pGppG pGp G+ Gp+Gp
    KIAA1983   257    -LPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGP 302  

                   <-*
                      
    KIAA1983     -     -    

PF01391.8.fs: domain 2 of 2, from 312 to 345: score 20.0, E = 0.00014
                   *->GppGppGppGppGppGppGppGpaGapGppGppG<-*
                      G++Gp GppG+pG +G +G+ G++G++G+pGppG   
    KIAA1983   312    GRRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPG    345  

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