hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18200075/chunk_1/iprscan-20080502-18200075.nocrc
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Query sequence: KIAA1983
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00179                                                  68.5    8.1e-16   2
SM00181                                                  49.1    5.7e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00179    1/2     101   145 ..     1    34 []    10.7    0.078
SM00181    1/2     104   145 ..     1    32 []    14.5       14
SM00179    2/2     146   187 ..     1    34 []    57.8  1.4e-12
SM00181    2/2     149   187 ..     1    32 []    34.7  1.3e-05

Alignments of top-scoring domains:
SM00179: domain 1 of 2, from 101 to 145: score 10.7, E = 0.078
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt...........r
                      D D C + pC +     +C+++ G   C+C pGy+ ++ +++++ ++
    KIAA1983   101    DYDVCaeaPCEQ-----QCTDnFGRVLCtCYPGYRydrerhrkrekP 142  

                   nCe<-*
                    C    
    KIAA1983   143 YCL    145  

SM00181: domain 1 of 2, from 104 to 145: score 14.5, E = 14
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg...........
                       Ca+ pC++       +C+++ +   C+C  pGy+ +++++++++++
    KIAA1983   104    VCAeaPCEQ-------QCTdnfgRVLCtCY-PGYRYdrerhrkrekp 142  

                   rCe<-*
                   +C    
    KIAA1983   143 YCL    145  

SM00179: domain 2 of 2, from 146 to 187: score 57.8, E = 1.4e-12
                   *->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe
                      DiDEC ++++++C +     +CiN+ GSYrC+C++Gy + +++++C+
    KIAA1983   146    DIDECassngtLCAH-----ICINtLGSYRCeCREGYIreddgKTCT 187  

                   <-*
                      
    KIAA1983     -     -    

SM00181: domain 2 of 2, from 149 to 187: score 34.7, E = 1.3e-05
                   *->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe
                      eCa+++++ C +       +Ci++ +sy+C+C+ +Gy+ ++++++C 
    KIAA1983   149    ECAssngtLCAH-------ICIntlgSYRCeCR-EGYIReddgkTCT 187  

                   <-*
                      
    KIAA1983     -     -    

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