hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-19000875/chunk_1/iprscan-20080502-19000875.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2007 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 411.3 1.3e-120 13 PF00096.16.fs Zinc finger, C2H2 type 387.1 2.4e-113 14 PF01352.17.fs KRAB box 94.1 4.1e-26 1 PF01352.17.ls KRAB box 96.1 9.7e-26 1 PF01096.9.fs Transcription factor S-II (TFIIS) 55.9 1.3e-16 11 PF01286.9.fs XPA protein N-terminal 45.6 3.1e-12 11 PF02892.5.fs BED zinc finger 42.0 1e-11 6 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 20.8 4.4e-06 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 3 43 .. 1 41 [] 94.1 4.1e-26 PF01352.17.ls 1/1 3 43 .. 1 41 [] 96.1 9.7e-26 PF00096.16.ls 2/13 243 265 .. 1 24 [] 31.8 2.1e-06 PF00096.16.fs 3/14 243 265 .. 1 24 [] 29.9 3.4e-06 PF00096.16.ls 3/13 271 293 .. 1 24 [] 32.7 1.2e-06 PF00096.16.fs 4/14 271 293 .. 1 24 [] 30.8 2e-06 PF00096.16.ls 4/13 299 321 .. 1 24 [] 32.7 1.2e-06 PF00096.16.fs 5/14 299 321 .. 1 24 [] 30.7 2.1e-06 PF00096.16.ls 5/13 327 349 .. 1 24 [] 36.3 9.5e-08 PF00096.16.fs 6/14 327 349 .. 1 24 [] 34.4 2.6e-07 PF00096.16.ls 6/13 355 377 .. 1 24 [] 29.6 1e-05 PF00096.16.fs 7/14 355 377 .. 1 24 [] 27.7 1.2e-05 PF00096.16.ls 7/13 383 405 .. 1 24 [] 40.0 7.4e-09 PF00096.16.fs 8/14 383 405 .. 1 24 [] 38.1 2.9e-08 PF00096.16.fs 9/14 411 433 .. 1 24 [] 32.2 8.7e-07 PF00096.16.ls 8/13 411 433 .. 1 24 [] 34.2 4.2e-07 PF00096.16.fs 10/14 439 461 .. 1 24 [] 26.9 1.8e-05 PF00096.16.ls 9/13 439 461 .. 1 24 [] 28.9 1.7e-05 PF00096.16.ls 10/13 467 489 .. 1 24 [] 38.2 2.6e-08 PF00096.16.fs 11/14 467 489 .. 1 24 [] 36.2 8.9e-08 PF00096.16.ls 11/13 495 517 .. 1 24 [] 23.9 0.00051 PF00096.16.fs 13/14 523 545 .. 1 24 [] 28.9 6e-06 PF00096.16.ls 12/13 523 545 .. 1 24 [] 30.9 4.3e-06 PF00096.16.ls 13/13 551 573 .. 1 24 [] 35.4 1.9e-07 PF00096.16.fs 14/14 551 573 .. 1 24 [] 33.4 4.5e-07 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 3 to 43: score 94.1, E = 4.1e-26 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF D aVdFt EEW lLdp+QrnLYrdVMlENy+nL+ +g KIAA2007 3 VTFDDLAVDFTPEEWTLLDPTQRNLYRDVMLENYKNLATVG 43 PF01352.17.ls: domain 1 of 1, from 3 to 43: score 96.1, E = 9.7e-26 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF D aVdFt EEW lLdp+QrnLYrdVMlENy+nL+ +g KIAA2007 3 VTFDDLAVDFTPEEWTLLDPTQRNLYRDVMLENYKNLATVG 43 PF00096.16.ls: domain 2 of 13, from 243 to 265: score 31.8, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+ ++ L+ H+ tH KIAA2007 243 YKCK-ECGKGFRYSAYLNIHMGTH 265 PF00096.16.fs: domain 3 of 14, from 243 to 265: score 29.9, E = 3.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+ ++ L+ H+ tH KIAA2007 243 YKCK-ECGKGFRYSAYLNIHMGTH 265 PF00096.16.ls: domain 3 of 13, from 271 to 293: score 32.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r+ +L++H++tH KIAA2007 271 YECK-ECGKAFTRSCQLTQHRKTH 293 PF00096.16.fs: domain 4 of 14, from 271 to 293: score 30.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r+ +L++H++tH KIAA2007 271 YECK-ECGKAFTRSCQLTQHRKTH 293 PF00096.16.ls: domain 4 of 13, from 299 to 321: score 32.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCg++F+ +s L +H+++H KIAA2007 299 YKCK-DCGRAFTVSSCLSQHMKIH 321 PF00096.16.fs: domain 5 of 14, from 299 to 321: score 30.7, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCg++F+ +s L +H+++H KIAA2007 299 YKCK-DCGRAFTVSSCLSQHMKIH 321 PF00096.16.ls: domain 5 of 13, from 327 to 349: score 36.3, E = 9.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg +F+r+s+L+ Hl+tH KIAA2007 327 YECK-ECGIAFTRSSQLTEHLKTH 349 PF00096.16.fs: domain 6 of 14, from 327 to 349: score 34.4, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg +F+r+s+L+ Hl+tH KIAA2007 327 YECK-ECGIAFTRSSQLTEHLKTH 349 PF00096.16.ls: domain 6 of 13, from 355 to 377: score 29.6, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+++s L H r+H KIAA2007 355 FECK-ICGKSFRNSSCLSDHFRIH 377 PF00096.16.fs: domain 7 of 14, from 355 to 377: score 27.7, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+++s L H r+H KIAA2007 355 FECK-ICGKSFRNSSCLSDHFRIH 377 PF00096.16.ls: domain 7 of 13, from 383 to 405: score 40.0, E = 7.4e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk+F+++s+L++H rtH KIAA2007 383 YKCK-DCGKAFTQNSDLTKHARTH 405 PF00096.16.fs: domain 8 of 14, from 383 to 405: score 38.1, E = 2.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk+F+++s+L++H rtH KIAA2007 383 YKCK-DCGKAFTQNSDLTKHARTH 405 PF00096.16.fs: domain 9 of 14, from 411 to 433: score 32.2, E = 8.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F r+s L H rtH KIAA2007 411 YECK-ECGKAFARSSRLSEHTRTH 433 PF00096.16.ls: domain 8 of 13, from 411 to 433: score 34.2, E = 4.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F r+s L H rtH KIAA2007 411 YECK-ECGKAFARSSRLSEHTRTH 433 PF00096.16.fs: domain 10 of 14, from 439 to 461: score 26.9, E = 1.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F +snL Hlr+H KIAA2007 439 FECV-KCGKAFAISSNLSGHLRIH 461 PF00096.16.ls: domain 9 of 13, from 439 to 461: score 28.9, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F +snL Hlr+H KIAA2007 439 FECV-KCGKAFAISSNLSGHLRIH 461 PF00096.16.ls: domain 10 of 13, from 467 to 489: score 38.2, E = 2.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F+++s+L++H+rtH KIAA2007 467 FECL-ECGKAFTHSSSLNNHMRTH 489 PF00096.16.fs: domain 11 of 14, from 467 to 489: score 36.2, E = 8.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F+++s+L++H+rtH KIAA2007 467 FECL-ECGKAFTHSSSLNNHMRTH 489 PF00096.16.ls: domain 11 of 13, from 495 to 517: score 23.9, E = 0.00051 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F+ + + H+r+H KIAA2007 495 FTCM-ECGKAFKFPTCVNLHMRIH 517 PF00096.16.fs: domain 13 of 14, from 523 to 545: score 28.9, E = 6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksFs + +++ H rtH KIAA2007 523 YKCK-QCGKSFSYSNSFQLHERTH 545 PF00096.16.ls: domain 12 of 13, from 523 to 545: score 30.9, E = 4.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksFs + +++ H rtH KIAA2007 523 YKCK-QCGKSFSYSNSFQLHERTH 545 PF00096.16.ls: domain 13 of 13, from 551 to 573: score 35.4, E = 1.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s++++H r+H KIAA2007 551 YECK-ECGKAFSSSSSFRNHERRH 573 PF00096.16.fs: domain 14 of 14, from 551 to 573: score 33.4, E = 4.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s++++H r+H KIAA2007 551 YECK-ECGKAFSSSSSFRNHERRH 573 //