hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19063943/chunk_1/iprscan-20080502-19063943.nocrc
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Query sequence: KIAA2011
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01369.11.ls Sec7 domain                                    340.4    2.8e-99   1
PF01369.11.fs Sec7 domain                                    338.5    1.1e-98   1
PF00169.19.fs PH domain                                       74.5    3.3e-22   1
PF00169.19.ls PH domain                                       76.5    7.9e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01369.11.fs   1/1     588   775 ..     1   221 []   338.5  1.1e-98
PF01369.11.ls   1/1     588   775 ..     1   221 []   340.4  2.8e-99
PF00169.19.fs   1/1     824   936 ..     1    92 []    74.5  3.3e-22
PF00169.19.ls   1/1     824   936 ..     1    92 []    76.5  7.9e-20

Alignments of top-scoring domains:
PF01369.11.fs: domain 1 of 1, from 588 to 775: score 338.5, E = 1.1e-98
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                      + s+ +++++++ +++++++ G++d++s+g++ad++++q++Ak+L+ 
    KIAA2011   588    PLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRLY- 633  

                   eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks
                   +++G++K++++++LG+n+df++ v++e++k +F+Ftg++Ld+ALR+fLk+
    KIAA2011   634 RLDGFRKADVARHLGKNNDFSKLVAGEYLK-FFVFTGMTLDQALRVFLKE 682  

                   FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa
                   ++L+GE+Q+++R+l++FS+rY+qc  Np+++s++             D+a
    KIAA2011   683 LALMGETQERERVLAHFSQRYFQC--NPEALSSE-------------DGA 717  

                   yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg
                   ++L+++l++LNTDLH +++++k+   MT++dFi+N++            g
    KIAA2011   718 HTLTCALMLLNTDLH-GHNIGKR---MTCGDFIGNLE------------G 751  

                   indGgDlprefLtelYesIkneei<-*
                   +ndGgD+pre+L++lY+sIkne++   
    KIAA2011   752 LNDGGDFPRELLKALYSSIKNEKL    775  

PF01369.11.ls: domain 1 of 1, from 588 to 775: score 340.4, E = 2.8e-99
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                      + s+ +++++++ +++++++ G++d++s+g++ad++++q++Ak+L+ 
    KIAA2011   588    PLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRLY- 633  

                   eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks
                   +++G++K++++++LG+n+df++ v++e++k +F+Ftg++Ld+ALR+fLk+
    KIAA2011   634 RLDGFRKADVARHLGKNNDFSKLVAGEYLK-FFVFTGMTLDQALRVFLKE 682  

                   FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa
                   ++L+GE+Q+++R+l++FS+rY+qc  Np+++s++             D+a
    KIAA2011   683 LALMGETQERERVLAHFSQRYFQC--NPEALSSE-------------DGA 717  

                   yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg
                   ++L+++l++LNTDLH +++++k+   MT++dFi+N++            g
    KIAA2011   718 HTLTCALMLLNTDLH-GHNIGKR---MTCGDFIGNLE------------G 751  

                   indGgDlprefLtelYesIkneei<-*
                   +ndGgD+pre+L++lY+sIkne++   
    KIAA2011   752 LNDGGDFPRELLKALYSSIKNEKL    775  

PF00169.19.fs: domain 1 of 1, from 824 to 936: score 74.5, E = 3.3e-22
                   *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk.
                      v+k+G L +k++ +++ +++++gk++wk  + +L++  L++ k++ +
    KIAA2011   824    VYKHGALVRKVhadpdcrktprGKRGWKSFHGILKGMILYLQKEEYk 870  

                   .......kkpkgsipLsgiqvtkvpdn.krkncFeirt.dretlllqaes
                   +++  ++ ++k  i++ ++  t+++d++kr+++F++rt d++++l+qa+s
    KIAA2011   871 pgkalseTELKNAISIHHALATRASDYsKRPHVFYLRTaDWRVFLFQAPS 920  

                   eeerkeWvkaiqsair<-*
                    e++++W++ i+ +++   
    KIAA2011   921 LEQMQSWITRINVVAA    936  

PF00169.19.ls: domain 1 of 1, from 824 to 936: score 76.5, E = 7.9e-20
                   *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk.
                      v+k+G L +k++ +++ +++++gk++wk  + +L++  L++ k++ +
    KIAA2011   824    VYKHGALVRKVhadpdcrktprGKRGWKSFHGILKGMILYLQKEEYk 870  

                   .......kkpkgsipLsgiqvtkvpdn.krkncFeirt.dretlllqaes
                   +++  ++ ++k  i++ ++  t+++d++kr+++F++rt d++++l+qa+s
    KIAA2011   871 pgkalseTELKNAISIHHALATRASDYsKRPHVFYLRTaDWRVFLFQAPS 920  

                   eeerkeWvkaiqsair<-*
                    e++++W++ i+ +++   
    KIAA2011   921 LEQMQSWITRINVVAA    936  

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