# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ff08438.fasta.huge -Q ../query/KIAA2024.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA2024, 437 aa
 vs ./tmplib.25089 library

1987068 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.5210+/-0.0045; mu= 21.7537+/- 0.307
 mean_var=76.9217+/-18.037, 0's: 0 Z-trim: 2  B-trim: 3 in 1/39
 Lambda= 0.146234

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0349  ( 1275 res)   hg01561                    (1275)  376 89.3 1.4e-18


>>KIAA0349  ( 1275 res)   hg01561                         (1275 aa)
 initn: 294 init1: 154 opt: 376  Z-score: 425.2  bits: 89.3 E(): 1.4e-18
Smith-Waterman score: 413;  25.424% identity (54.479% similar) in 413 aa overlap (32-422:885-1252)

              10        20        30        40        50        60 
KIAA20 FTYRTNLELELIHRGGNLCSGGASTAGKRSCLNQLFHVLALHMRLYSIDSEYNPWRKLTQ
                                     :: .: .  : :  . :..   . . ::  
KIAA03 SCAYTIQSIERILSDEDKPLFGPLPCRLDDCLRSLTRFAAAHWTVASVSVVQGHFCKL--
          860       870       880       890       900       910    

              70         80        90       100             110    
KIAA20 LEEMNPQLGYEEQQPEVP-ILYHDVTSLLLIQILMMPQPLRKDHFTCI------VKVLFT
       .  . :. ..::    .: ::  :.  ::.  .: .:  :. . :. :      ....  
KIAA03 FASLVPNDSHEE----LPCILDIDMFHLLVGLVLAFPA-LQCQDFSGISLGTGDLHIFHL
            920           930       940        950       960       

          120       130       140        150       160       170   
KIAA20 LLYTQALAALSVKCSEEDRSAWKHAGALKKST-CDAEKSYEVLLSFVISELFKGKLYHEE
       . ... .  : ..:.::.       :  ...  :. :..        .  :.:  :..  
KIAA03 VTMAHIIQILLTSCTEEN-------GMDQENPPCEEESA--------VLALYK-TLHQYT
       970       980              990              1000       1010 

           180       190       200       210          220       230
KIAA20 GTQECAMVNPIAWSPESMEKCLQDFCLPFLRITSLLQHHLFGEDLP---SCQEEEEFSVL
       :.    .  : .:    . . ..   .:::. ..:. :.: :   :   .     .:  :
KIAA03 GSALKEI--PSGW---HLWRSVRAGIMPFLKCSALFFHYLNGVPSPPDIQVPGTSHFEHL
              1020         1030      1040      1050      1060      

                 240       250       260         270       280     
KIAA20 ASCLGL---LPTFYQTEHPFISASCLDWPVPAFDIITQWCF--EIKSFTERHAEQGKALL
        : :.:   :  ..: .  ....           .: .::   :.: . :  .:.     
KIAA03 CSYLSLPNNLICLFQENSEIMNS-----------LIESWCRNSEVKRYLE--GERDAIRY
       1070      1080                 1090      1100        1110   

         290       300       310        320       330       340    
KIAA20 IQESKWKLPHLLQLPENYNTIFQYYHRKTCSVCT-KVPKDPAVCLVCGTFVCLKGLCCKQ
        .::.    .:..:::.:.....     .:        . :..:::::...: .. ::. 
KIAA03 PRESN----KLINLPEDYSSLINQASNFSCPKSGGDKSRAPTLCLVCGSLLCSQSYCCQT
              1120      1130      1140      1150      1160         

              350       360       370        380       390         
KIAA20 QSYCE----CVLHSQNCGAGTGIFLLINASVIIIIRGH-RFCLWGSVYLDAHGEEDRDLR
       .   :    :. :. .::.:.:::: .    .... :. . :...  ::: .:: :. ::
KIAA03 ELEGEDVGACTAHTYSCGSGVGIFLRVRECQVLFLAGKTKGCFYSPPYLDDYGETDQGLR
    1170      1180      1190      1200      1210      1220         

     400       410       420       430               
KIAA20 RGKPLYICKERYKVLEQQWISHTFDHINKRWGPHYNGL        
       ::.::..::::.: ... : .:.                       
KIAA03 RGNPLHLCKERFKKIQKLWHQHSVTEEIGHAQEANQTLVGIDWQHL
    1230      1240      1250      1260      1270     




437 residues in 1 query   sequences
1987068 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:26:06 2008 done: Thu Dec 18 15:26:06 2008
 Total Scan time:  0.410 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]