植物ゲノム・遺伝学研究室

論文リスト

2019
2018
2017
2016
2015
2014以前

2019

Mapping of a novel clubroot resistance QTL using ddRAD-seq in Chinese cabbage (Brassica rapa L.).: Laila R, Park JI, Robin AHK, Natarajan S, Vijayakumar H, Shirasawa K, Isobe S, Kim HT, Nou IS; BMC Plant Biol. 19(1): 13. (2019)

A pure line derived from a self-compatible Chrysanthemum seticuspe mutant as a model strain in the genus Chrysanthemum.: Nakano M, Taniguchi K, Masuda Y, Kozuka T, Aruga Y, Han J, Motohara K, Nakata M, Sumitomo K, Hisamatsu T, Nakano Y, Yagi M, Hirakawa H, Isobe SN, Shirasawa K, Nagashima Y, Na H, Chen L, Liang G, Chen R, Kusaba M; Plant Sci. 287: 110174. (2019)

The genome sequence of segmental allotetraploid peanut Arachis hypogaea.: Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz J; Nat Genet. 51(5): 877-884. (2019)

A reference-grade wild soybean genome: Min Xie, Claire Yik-Lok Chung, Man-Wah Li, Fuk-Ling Wong, Xin Wang, Ailin Liu, Zhili Wang, Alden KY Leung, Tin-Hang Wong, Suk-Wah Tong, Zhixia Xiao, Kejing Fan, Ming-Sin Ng, Xinpeng Qi, Linfeng Yang, Tianquan Deng, Lijuan He, Lu Chen, Aisi Fu, Qiong Ding, Junxian He, Gyuhwa Chung, Sachiko Isobe, Takanari Tanabata, Babu Valliyodan, Henry Nguyen, Steven Cannon, Christine Foyer, Ting-Fung Chan, and Hon-Ming Lam; Nat Commun. 10(1): 1216. (2019)

De novo whole-genome assembly in Chrysanthemum seticuspe, a model species of Chrysanthemums, and its application to genetic and gene discovery analysis.: Hirakawa H, Sumitomo K, Hisamatsu T, Nagano S, Shirasawa K, Higuchi Y, KusabaM, Koshioka M, Nakano Y, Yagi M, Yamaguchi H, Taniguchi K, Nakano M, Isobe SN.; DNA Res. 26(3): 195-203. (2019)

Genome-Wide Association Studies (GWAS) for Yield and Weevil Resistance in Sweet potato (Ipomoea batatas (L.) Lam).: Okada Y, Monden Y, Nokihara K, Shirasawa K, Isobe S, Tahara M; Plant Cell Rep. 38(11): 1383-1392. (2019)

Current status in whole genome sequencing and analysis of Ipomoea spp.: Isobe S, Shirasawa K, Hirakawa H; Plant Cell Rep.38(11): 1365-1371. (2019)

Genome-wide association study overcomes the genome complexity in autohexaploid chrysanthemum and tags SNP markers onto the flower color genes.: Sumitomo K, Shirasawa K, Isobe S, Hirakawa H, Hisamatsu T, Nakano Y, Yagi M, Ohmiya A; Sci Rep. 9(1): 13947. (2019)

Development of molecular markers associated with resistance to Meloidogyne incognita by performing quantitative trait locus analysis and genome-wide association study in sweetpotato.: Sasai R, Tabuchi H, Shirasawa K, Kishimoto K, Sato S, Okada Y, Kuramoto A, Kobayashi A, Isobe S, Tahara M, Monden Y; DNA Res. 26(5): 399-409. (2019)

Phased genome sequence of an interspecific hybrid flowering cherry, Somei-Yoshino (Cerasus × yedoensis).: Shirasawa K, Esumi T, Hirakawa H, Tanaka H, Itai A, Ghelfi A, Nagasaki H, Isobe S; DNA Res.26(5): 379-389. (2019)

Construction of genetic linkage map and identification of a novel major locus for resistance to pine wood nematode in Japanese black pine (Pinus thunbergii).: Hirao T, Matsunaga K, Hirakawa H, Shirasawa K, Isoda K, Mishima K, Tamura M, Watanabe A; BMC Plant Biol. 19(1): 424. (2019)

Foliar disease resistant and productive mutants from the introgression lines of peanut (Arachis hypogaea).: Pushpesh Joshi, Mangesh P. Jadhav, Kenta Shirasawa, Arati Yadawad, Ramesh S. Bhat; PLANT BREEDING. 139(1): 148-155. (2019)

Hayai-Annotation Plants: an ultra-fast and comprehensive functional gene annotation system in plants.: Ghelfi A, Shirasawa K, Hirakawa H, Isobe S; Bioinformatics. 35(21): 4427-4429. (2019)

Evaluation of a new recombinant inbred line mapping population for genetic mapping in groundnut (Arachis hypogaea L.).: Sukruth M, Shirasawa K, Bhat R; Int J Curr Mocrobiol App Sci 8: 2956-2965. (2019)

Impact of Genomics on Capsicum breeding.: Shirasawa K, Ban T, Nagata N, Murakana T; The Capsicum Genome Springer: 209-219. (2019)

Development of DNA marker for distinguishing flesh colour in sweet cherry (Prunus avium L.).: Saito Y, Adachi E, Isuzugawa K, Shirasawa K, Ikenaga M, Sato H; Acta Horticulturae 1235 15-25. (2019)

Development of DNA markers for breeding yellow cherries.: Sato S, Saito Y, Shirasawa K, Ikeda K; Acta Horticulturae 1235 27-32. (2019)

Genomic diversity in old and recent carrot cultivars and breeding populations at a Japanese seed company.: Shibaya T, Kuroda C, Fujii T, Nakayama S, Minami C, Shirasawa K, Isobe S; Acta Horticulturae 1264 249-254. (2019)

QTL analysis and candidate gene SNP for harvest day in sweet cherry (Prunus avium L.).: Isuzugawa K, Shirasawa K, Kurosaka S, Takahashi Y, Saito Y, Adachi E, Ikenaga M, Yamamoto T; Acta Horticulturae 1235 33-40. (2019)

The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants.: Akagi T, Shirasawa K, Nagasaki H, Hirakawa H, Tao R, Comai L, Henry IM; doi: https://doi.org/10.1101/628537

SNP判別PCRによる落花生ahFAD2B遺伝子の変異の判別: 渡辺学、桑田主悦、白澤健太、磯部祥子、深見正信; DNA多型　26(1): 77-80. (2019)

アグリゲノム産業研究会-アカデミアと産業会の交流を目指して-: 磯部祥子・岩田洋佳・布目司; バイオサイエンスとインダストリー　77(1): 78-80. (2019)

イチゴのDNA分析からわかること: 磯部祥子; 自費出版書籍. (2019)

倍数性作物におけるNGS利用: 田中剛、磯部祥子、門田有希、石川吾郎、瀬々潤; 育種学研究　21(1): 55-60. (2019)

2018

Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.): Mani, G., Shirasawa, K., Varshney, R.K., Pandey, M.K., and Bhat, R.S. 2018; BMC Res. Notes, 11:10

Characterization of Egyptian Phytophthora infestans population using simple sequence repeat markers: Arafa, R.A., Soliman, N.E.K., Moussa, O.M., Kamel, S.M., and Shirasawa, K. 2018; J. Gen. Plant Pathol., Volume 84, Issue 2, pp 104–107

A 3D Shape-Measuring System for Assessing Strawberry Fruits: Kochi, N., Tanabata, T., Hayashi, A., Isobe, S. 2018; International J of Automation Technology, 12(3) pp 395-404

Genome-wide structural mutations among the lines resulting from genetic instability in peanut (Arachis hypogaea L.): Hake, A.A., Shirasawa, K., Yadawad, A., Nadaf, H.L., Gowda, M.V.C., and Bhat, R.S. 2018; Plant Gene, 13, 1-7.

2017

Derivation of Linear Models for Quantitative Traits by Bayesian Estimation with Gibbs Sampling.: Nakaya, A., Isobe, S. 2017; In: Varshney R., Roorkiwal M., Sorrells M. (eds) Genomic Selection for Crop Improvement. Springer, pp 23-53

Rapid identification of candidate genes for resistance to tomato late blight disease using next-generation sequencing technologies: Arafa, R.A., Rakha, M.T., Soliman, N.E.K., Moussa, O.M., Kamel, S.M., and Shirasawa, K. 2017; Plos One, 12, e0189951.

Identification of transposable element markers associated with yield and quality traits from an association panel of independent mutants in peanut (Arachis hypogaea L.): Hake, A.A., Shirasawa, K., Yadawad, A., et al. 2017; Euphytica, 213, 283.

Marker-assisted backcrossing to develop foliar disease-resistant genotypes in TMV 2 variety of peanut (Arachis hypogaea L.): Kolekar, R.M., Sukruth, M., Shirasawa, K., et al. 2017; Plant Breed., Volume 136, Issue 6, pages 948–953

Sequence analysis of cultivated strawberry (Fragaria × ananasa Duch.) using microdissected single somatic chromosomes: Yanagi, T., Shirasawa, K., Terachi, M., and Isobe, S. 2017; Plant Methods, 13, 91.

Mapping of important taxonomic and productivity traits using genic and non-genic transposable element markers in peanut (Arachis hypogaea L.): Hake, A.A., Shirasawa, K., Yadawad, A., et al. 2017; Plos One, 12, e0186113.

Climate clever clovers: new paradigm to reduce the environmental footprint of ruminants by breeding low methanogenic forages utilising haplotype variation: Kaur, P., Appels, R., Bayer, P. E., Keeble-Gagnere, G., Wang, J., Hideki, H., Shirasawa, K., Vercoe, P., Stefanova, K., Durmic, Z., Nichols, P., Revell, C., Isobe, S. N., Edwards, D., Erskine, W. 2017; Front. Plant Sci., 8, 1463.

Resistance to Phytophthora infestans in tomato wild relatives: Arafa, R.A., Moussa, O.M., Soliman, N.E.K., Shirasawa, K., Kamel, S.M., and Rakha, M.T. 2017; Afr. J. Agric. Res., 12, 2188-2196.

Discrimination of candidate subgenome-specific loci by linkage map construction with an S1 population of octoploid strawberry (Fragaria × ananassa): Nagano, S., Shirasawa, K., Hirakawa, H., Maeda, F., Ishikawa, M., and Isobe, S.N. 2017; BMC Genomics, 18, 374.

Bayesian QTL mapping using genome-wide SSR markers and segregating population derived from a cross of two commercial F1 hybrids of tomato: Ohyama, A., Shirasawa, K., Matsunaga, H., et al. 2017; Theor. Appl. Genet., 130, 1601-1616.

The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding: Shirasawa, K., Isuzugawa, K., Ikenaga, M., et al. 2017; DNA Res., 24, 499-508.

A system for distinguishing octoploid strawberry cultivars using high-throughput SNP genotyping: Jung, H.J., Veerappan, K., Natarajan, S., Jeong, N., Hwang, I., Nagano, S., Shirasawa, K., Isobe, S., Nou, I.S. 2017; Trop. Plant Biol., 10, 68-76.

A high-density SNP genetic map consisting of a complete set of homologous groups in autohexaploid sweetpotato (Ipomoea batatas): Shirasawa, K., Tanaka, M., Takahata, Y., et al. 2017; Sci. Rep., 7, 44207.

Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.): Mori, K., Shirasawa, K., Nogata, H., et al. 2017; Sci. Rep., 7, 41124.

Construction of an SSR and RAD marker-based genetic linkage map for carnation (Dianthus caryophyllus L.): Yagi, M., Shirasawa, K., Waki, T., et al. 2017; Plant Mol. Biol. Rep., 35, 110.

Challenges to genome sequence dissection in sweetpotato: Isobe, S., Shirasawa, K., and Hirakawa, H. 2017; Breed. Sci., 67, 35-40.

Genetic maps and whole genome sequences of radish.: Shirasawa, K. and Kitashiba, H. 2017; In: Nishio, T. and Kitashiba, H. (eds) Compendium of Plant Genomes The Radish Genome, Springer, Cham, pp. 31-42.

Crop genome research toward genomics-assisted breeding: Shirasawa, K. 2017; Agric. Biotechnol., 1, 76-82.

Development and characterization of a strawberry MAGIC population derived from crosses with six strawberry cultivars.: Wada, T., Oku, K., Nagano, S., Isobe, S. Suzuki, H., Mori, M., Takata, K. Hirata, C., Shimomura, K., Tsubone, M. et al. 2017; Breed Sci, 67(4):370-381

Verification of linkage group using PRINS labeling technique in cultivated strawberry.: Tantivit, K, Isobe, S, Nathewet, P, Okuda, N, Yanagi T. 2017; Acta Horticulturae 1156: VIII International Strawberry Symposium, 10.17660/ActaHortic.2017.1156.22

Effect of insect pollinator on inbreeding versus outbreeding in open pollinated strawberry seeds.: Yanagi, T., Miura, H., Isobe, S., Okuda, N., Yoshida, Y. 2017; Scientia Horticulturae 215 (27):112-116.

Altered regulation of TERMINAL FLOWER 1 causes the unique vernalisation response in an arctic woodland strawberry accession.: Koskela E. A., Kurokura, T., Toivainen, T., Sønsteby, A., Heide, O. M., Sargent, D. J., Isobe S., Jaakola, L., Hilmarsson, H., Elomaa P., Hytönen, T. 2017; New Phytologist DOI: 10.1111/nph.14734

Development of Genome-wide SSR Markers in Horsegram and Their Utilization for Genetic Diversity and Cross-transferability Analysis.: Kaldate, R., Maneet, R., Sharma, R., Hirakawa, H., Kumar, R., Singh, G., Chahota, R. K., Isobe, S. N., Sharma, T., R.; Mol Beed 31:103 (2017)

Development of a Core Collection of Strawberry Cultivars Based on SSR and CAPS Marker Polymorphisms.: Wada, T., Noguchi, Y., Isobe, S., Kunihisa, M., Sueyoshi, T., Shimomura, K. 2017; The Horticulture Journal doi: 10.2503/hortj.MI-142

When the 3rd generation sequencing technologies go marching in.: Isobe, S., Koyanagi, R., Osaki, K. 2017; Ikuysyugakukenkyu, (in Japanese), 19:30-34

2016

Construction of a high-resolution digital map to support citrus breeding using an autonomous multicopter.: Haris, M., Ishii, K., Ziyang, L., Sugiura, T., Qi, M., Watanabe, T., Sukisaki S., Tanabata, T., Isobe, S., Shimizu, T., Yoshioka, T., Nobuhara, H. 2016; ISHS Acta Horticulturae 1135: III International Symposium on Citrus Biotechnology 10.17660/ActaHortic.2016.1135.9

Current SNP genotyping methods for genetics and molecular breeding.: Isobe, S., Kaga, A., Teuzuka, A., Ishikawa, G., Nakamura, T. 2016; Ikuysyugakukenkyu, (in Japanese), 18:21-26

Target amplicon sequencing for genotyping genome-wide single nucleotide polymorphisms identified by whole genome resequencing in peanut: Shirasawa, K., Kuwata, C., Watanabe, M., Fukami, M., Hirakawa, and H., Isobe, S. 2016; Plant Genome, 9, 10.3835/plantgenome2016.06.0052.

The development of a primed in-situ hybridization technique for chromosome labeling in cultivated strawberry (Fragaria × ananassa).: Tantvit, K., Isobe, S., Nathewet, P., Okuda, N., Yanagi, T. 2016; Cytologia 81(4): 439–446

Draft genome sequence of subterranean clover, a reference for genus Trifolium: Hirakawa, H., Kaur, P., Shirasawa, K., Nichols, P., Nagano, S., Appels, R., Erskine, W., Isobe, S.N. 2016; Sci. Rep., 6, 30358.

QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.): Kolekar, R.M., Sujay, V., Shirasawa, K., et al. 2016; Euphytica, 209, 147-156.

Larg-scale development of simple sequence repeat (SSR) marker using RNA-seq and SSR-enrichment library for Chinese chive (Allium ramosum syn. A. fuberosum).: Tasaki, K., Wakamasu, M., Namai, K., Hirakawa, H., Sasamoto, S., Tsuruoka, H., Minami, C., Isobe, S. 2016; I. DNA polymorphism 24(1):127-133 in Japanese.

Analytical workflow of double-digest restriction site-associated DNA sequencing based on empirical and in silico optimization in tomato: Shirasawa, K., Hirakawa, H., and Isobe, S. 2016; DNA Res., 23, 145-153.

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut: Bertioli, D.J., Cannon, S.B., Froenicke, L., Huang, G., Farmer, A.D., Cannon, E.K.S., Liu, X., Gao, D., Clevenger, J., Dash, S., Ren, L., Moretzsohn, M.C., Shirasawa, K., Huang, W., Vidigal, B., Abernathy, B., Chu, Y., Niederhuth, C.E., Umale, P., Araujo, A.C.G., Kozik, A., Kim, K.D., Burow, M.D., Varshney, R.K., Wang, X., Zhang, X., Barkley, N., Guimarães, P.M., Isobe, S., Guo, B., Liao, B., Stalker, H.T., Schmitz, R.J., Scheffler, B.E., Leal-Bertioli, S.C.M., Xun, X., Jackson, S.A., Michelmore, R., Ozias-Akins, P. 2016; Nat. Genet., 48, 438-446.

A simulation-based breeding design that uses whole-genome prediction in tomato: Yamamoto, E., Matsunaga, H., Onogi, A., et al. 2016; Sci. Rep., 6, 19454.

Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato: Shirasawa, K., Hirakawa, H., Nunome, T., Tabata, S., and Isobe, S. 2016; Plant Biotechnol. J., 14, 51-60.

Genomics research and development of genome-based breeding technologies in vegetable crops: Shirasawa, K. 2016; Breed. Res., 18, 124-129.

2015

Identification of QTLs for rust resistane in the peanut wild species Arachis magna and the development of KASP markers for maker assisted selection: Leal-Bertioli, S.C.M., Cavalcante, U., Gouvea, E.G., et al. 2015; G3, 5, 1403-1413.

Survey of genome sequences in a wild sweet potato, Ipomoea trifida (H. B. K.) G. Don: Hirakawa, H., Okada, Y., Tabuchi, H., et al. 2015; DNA Res., 22, 171-179.

Tetrasomic recombination is surprisingly frequent in allotetraploid Arachis: Leal-Bertioli, S.C.M., Shirasawa, K., Abernathy, B., et al. 2015; Genetics, 199, 1093-1105.

A reference genetic linkage map of apomictic Hieracium species based on expressed markers derived from developing ovule transcripts: Shirasawa, K., Hand, M.L., Henderson, S.T., et al. 2015; Ann. Bot., 115, 567-580.

Development of F1-hybrid Strawberry of Seed Propagation Type Named 'Yotsuboshi': Mori, T., Kohori, J., Kitamura, H., Inokuchi, T., Kato, I., Sone, K., Ishikawa, M., Maeda, F., Fukami, M., Isobe, S., Sato S. 2015; Hort. Res. (in Japanese) 14 (4)：409–418．

A Novel Phenolic Compound, Chloroxynil, Improves Agrobacterium-Mediated Transient Transformation in Lotus japonicas: Kimura, M., Cutler, S., Isobe, S., 2015; PLOS ONE 10.1371/journal.pone.0131626.

2014以前

Detection of genome donor species of neglected tetraploid crop Vigna reflex-pilosa (créole bean), and genetic structure of diploid species based on newly developed EST-SSR markers from azuki bean (Vigna angularis): Chankaew, S., Isemura, T., Isobe, S., et al. 201; Plos One, 9, e104990.

Draft genome sequence of eggplant (Solanum melongena L.): the representative Solanum species indigenous to the Old World: Hirakawa, H., Shirasawa, K., Miyakate, K., et al. 2014; DNA Res., 21, 649-660.

Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba): El-Rodeny, W., Kimura, M., Hirakawa, H., et al. 2014; Breed. Sci., 64, 252-263.

Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum): Ariizumi, T., Kishimoto, S., Kakami, R., Maoka, T., Hirakawa, H., Suzuki, Y., Ozeki, Y., Shirasawa, K., Bernillon, S., Okabe, Y., Moing, A., Asamizu, E., Rothan, C., Ohmiya, A., Ezura, H. 2014; Plant J., 79, 453-465.

Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants: Shirasawa, K., Isobe, S., Tabata, S., and Hirakawa, H. 2014; Breed. Sci., 64, 264-271.

Genome-wide comparative analysis of 20 miniature inverted-repeat transposable element families in Brassica rapa and B. oleracea: Sampath, P., Murukarthick, J., Izzah, N.K., Lee, J., Choi, H. I., Shirasawa, K., Choi, B.S., Liu, S., Nou, I. S. Yang, T.J. 2014; Plos One, 9, e94499.

Draft sequences of the radish (Raphanus sativus L.) genome: Kitashiba, H., Li, F., Hirakawa, H., et al. 2014; DNA Res., 21, 481-490.

Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai): Terakami, S., Nishitani, C., Kunihisa, M., Shirasawa, K., Sato, S., Tabata, S., Kurita, K., Kanamori, H., Katayose, Y., Takada, N., Saito, T., Yamamoto, T. 2014; Tree Genet. Genomics, 10, 853-863.

Regulatory change in cell division activity and genetic mapping of a tomato (Solanum lycopersicum L.) elongated-fruit mutant: Chusreeaeom, K., Ariizumi, T., Asamizu, E., Okabe, Y., Shirasawa, K., and Ezura, H. 2014; Plant Biotechnol., 31, 149-158.

A novel tomato mutant, Solanum lycopersicum elongated fruit1 (Slelf1), exhibits an elongated fruit shape caused by increased cell layers in the proximal region of the ovary: Chusreeaeom, K., Ariizumi, T., Asamizu, E., Okabe, Y., Shirasawa, K., and Ezura, H. 2014; Mol. Genet. Genomics, 289, 399-409.

Sequence analysis of the genome of carnation (Dianthus caryophyllus L.): Yagi, M., Kosugi, S., Hirakawa, H., et al. 2014; DNA Res., 21, 231-241.

Dissection of the octoploid strawberry genome by deep-sequencing of Fragaria species: Hirakawa, H., Shirasawa, K., Kosugi, S., et al. 2014; DNA Res., 21, 169-181.

Development of NILs from heterogeneous inbred families for validating the rust resistance QTLs in peanut (Arachis hypogaea L.): Yeri, S.B., Shirasawa, K., Pandey, M.K., et al. 2014; Plant Breed., 133, 80-85.

An Overview of Peanut Genome Structure.: Bertioli, D.J., Araujo, A.C.G., Nielen, S., Heslop-Harrison, P., Guimarães, P.M., Schwarzacher, T., Isobe, S., Shirasawa, K. Leal-Bertioli, S.C.M. 2014; In: Mallikarjuna, N. and Varshney, R.K. (eds) Genetics, Genomics and Breeding of Peanuts, CRC Press, Florida, pp. 114-138.

Breeding of red clover 'Ryokuyu' and its charcteristics.: Okumura, K., Isobe, S., Gau, M., Yamaguchi, H., Sawai, A., Takada, H., Hiroi, K., Uchiyama, K., Matsumura, T., Hayashi, T., Sato, N., Makino, T., Deguchi, K., Yamakawa, M., Sawada, Y., Fujii, H. 2014; Res. Bull. NARO Hokkaido Agric. Res. Cent. 203:1-14.

Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.: Qi, X., Li, M.W., Xie, M., Liu, X., Ni, M., Shao, G., Song, C., Kay-Yuen Yim, A., Tao, Y., Wong, F.L., Isobe, S., Wong, C.F., Wong, K.S., Xu, C., Li, C., Wang, Y., Guan, R., Sun, F., Fan, G., Xiao, Z., Zhou, F., Phang, T.H., Liu, X., Tong, S.W., Chan, T.F., Yiu, S.M., Tabata, S., Wang, J., Xu, X., Lam, H.M..; Nat Commun. 5:4340.

Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato: Shirasawa, K., Fukuoka, H., Matsunaga, H., et al. 2013; DNA Res., 20, 593-603.

Genome-wide SNP genotyping to infer the effects on gene functions in tomato: Hirakawa, H., Shirasawa, K., Ohyama, A., et al. 2013; DNA Res., 20, 221-233.

Analysis of a tomato introgression line, IL8-3, with increased Brix content: Ikeda, H., Hiraga, M., Shirasawa, K., Nishiyama, M., Kanahama, K., and Kanayama, Y. 2013; Sci. Hortic., 153, 103-108.

Integrated consensus map of cultivated peanut and wild relatives reveals structures of the A and B genomes of Arachis and divergence of the legume genomes: Shirasawa, K., Bertioli, D.J., Varshney, R.K., et al. 2013; DNA Res., 20, 173-184.

Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria ×ananassa) and its applicability: Isobe, S.N., Hirakawa, H., Sato, S., et al. 2013; DNA Res., 20, 79-92.

Development of Capsicum EST-SSR markers for species identification and in silico mapping onto the tomato genome sequence: Shirasawa, K., Ishii, K., Kim, C., et al. 2013; Mol. Breed., 31, 101-110.

Structural analyses of the tomato genome: Sato, S., Shirasawa, K., and Tabata, S. 2013; Plant Biotechnol., 3, 257-263.

DNA marker applications to molecular genetics and genomics in tomato: Shirasawa, K. and Hirakawa, H. 2013; Breed. Sci., 63, 21-30.

Marker-assisted backcrossing selection for high O/L ratio in cultivated peanut.: Koilkonda, P., Kuwata, C., Fukami, M., Shirasawa, K., Aoki, K., Tabata, S., Hasegawa, M., Kiyoshima, H., Suzuki, S., Sasamoto, S., Kurabayashi, A., Tsuruoka, H., Wada, T., Isobe, 2013; In: Varshney, R. and Tuberosa, R. (eds) Translational Genomics for Crop Breeding: Abiotic Stress, Yield and Quality, Vol. 2. John Wiley & Sons Ltd, Chichester, pp. 177-192.

Genome-wide SNP marker development and QTL identification for genomic selection in red clover.: Isobe, S., Boller, B., Klimenko, I., et al. 2013; In: Barth, S. and Milbourne, D. (eds) Breeding Strategy for Sustainable Forage and Turf Grass Improvement, Springer, Dordrecht, pp. 29-36.

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